Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of UxuR2 in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type: Transcription factor
TF locus tag: Atu3252, Atu2821
Regulator family: GntR/Others
Regulation mode:
Biological process: Galacturonate utilization
Effector:
Regulog: UxuR2 - Rhizobiales
Statistics of regulated genes:
- Genes 15
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -205
Score: 4.8
Sequence: CAAATGGTTAGGCCGGTTT
Position: -183
Score: 5.2
Sequence: ATAATGGTCAAGCCAATTA
Position: 1
Score: 4.5
Sequence: TGAATGGTCAGGCCAAAAT
Locus tag: Atu2821
Name: uxuR2-2
Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Atu2822
Name: garD
Funciton: D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7)
uxuR2-2
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
garD
D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7)

Position: -64
Score: 5.3
Sequence: AAATTGGTAAGACCATCTT
Locus tag: Atu3252
Name: uxuR2
Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Atu3253
Name: dctP
Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Atu3254
Name: dctQ
Funciton: TRAP-type C4-dicarboxylate transport system, small permease component
Locus tag: Atu3255
Name: dctM
Funciton: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter
Locus tag: Atu3256
Name: idnD2
Funciton: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase
Locus tag: Atu3257
Name: uxuA
Funciton: D-Mannonate dehydratase (EC 4.2.1.8)
uxuR2
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
dctP
TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
dctQ
TRAP-type C4-dicarboxylate transport system, small permease component
dctM
TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter
idnD2
zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase
uxuA
D-Mannonate dehydratase (EC 4.2.1.8)

Position: -322
Score: 4.5
Sequence: ATTTTGGCCTGACCATTCA
Position: -138
Score: 5.2
Sequence: TAATTGGCTTGACCATTAT
Position: -116
Score: 4.8
Sequence: AAACCGGCCTAACCATTTG
Locus tag: Atu2819
Name: rbsA
Funciton: ABC transporter, nucleotide binding/ATPase protein (ribose)
Locus tag: Atu2818
Name: rbsC
Funciton: ABC transporter, permease protein (ribose)
Locus tag: Atu2817
Name: rbsB
Funciton: ABC transporter, substrate binding protein (ribose)
Locus tag: Atu2816
Name: null
Funciton: oxidoreductase
Locus tag: Atu2815
Name: null
Funciton: hypothetical protein
Locus tag: Atu2814
Name: idnD3
Funciton: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase
Locus tag: Atu2813
Name: uxaB
Funciton: altronate oxidoreductase
rbsA
ABC transporter, nucleotide binding/ATPase protein (ribose)
rbsC
ABC transporter, permease protein (ribose)
rbsB
ABC transporter, substrate binding protein (ribose)
oxidoreductase
hypothetical protein
idnD3
zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase
uxaB
altronate oxidoreductase
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