Regulon of UxuR2 in Agrobacterium tumefaciens str. C58 (Cereon)
| Regulator type: | Transcription factor |
| TF locus tag: | Atu3252, Atu2821 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Galacturonate utilization |
| Effector: | |
| Regulog: | UxuR2 - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - GntR/Others
- By pathway - Galacturonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -205
Score: 4.8 Sequence: CAAATGGTTAGGCCGGTTT
Position: -183
Score: 5.2 Sequence: ATAATGGTCAAGCCAATTA
Position: 1
Score: 4.5 Sequence: TGAATGGTCAGGCCAAAAT
Locus tag: Atu2821
Name: uxuR2-2 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Atu2822
Name: garD Funciton: D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7) |
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uxuR2-2
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
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garD
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D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7)
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Position: -64
Score: 5.3 Sequence: AAATTGGTAAGACCATCTT
Locus tag: Atu3252
Name: uxuR2 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Locus tag: Atu3253
Name: dctP Funciton: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
Locus tag: Atu3254
Name: dctQ Funciton: TRAP-type C4-dicarboxylate transport system, small permease component
Locus tag: Atu3255
Name: dctM Funciton: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter
Locus tag: Atu3256
Name: idnD2 Funciton: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase
Locus tag: Atu3257
Name: uxuA Funciton: D-Mannonate dehydratase (EC 4.2.1.8) |
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uxuR2
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
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dctP
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TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
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dctQ
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TRAP-type C4-dicarboxylate transport system, small permease component
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dctM
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TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter
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idnD2
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zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase
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uxuA
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D-Mannonate dehydratase (EC 4.2.1.8)
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Position: -322
Score: 4.5 Sequence: ATTTTGGCCTGACCATTCA
Position: -138
Score: 5.2 Sequence: TAATTGGCTTGACCATTAT
Position: -116
Score: 4.8 Sequence: AAACCGGCCTAACCATTTG
Locus tag: Atu2819
Name: rbsA Funciton: ABC transporter, nucleotide binding/ATPase protein (ribose)
Locus tag: Atu2818
Name: rbsC Funciton: ABC transporter, permease protein (ribose)
Locus tag: Atu2817
Name: rbsB Funciton: ABC transporter, substrate binding protein (ribose)
Locus tag: Atu2816
Name: null Funciton: oxidoreductase
Locus tag: Atu2815
Name: null Funciton: hypothetical protein
Locus tag: Atu2814
Name: idnD3 Funciton: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase
Locus tag: Atu2813
Name: uxaB Funciton: altronate oxidoreductase |
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rbsA
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ABC transporter, nucleotide binding/ATPase protein (ribose)
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rbsC
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ABC transporter, permease protein (ribose)
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rbsB
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ABC transporter, substrate binding protein (ribose)
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oxidoreductase
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hypothetical protein
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idnD3
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zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase
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uxaB
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altronate oxidoreductase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |