Regulog UxuR2 - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Galacturonate utilization |
| Effector: | |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - GntR/Others
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | 15 | 3 |
| Azorhizobium caulinodans ORS 571 | ||
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | 11 | 4 |
| Bradyrhizobium sp. BTAi1 | ||
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | ||
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Rhizobium etli CFN 42 | 5 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 2 | 1 |
| Rhizobium sp. NGR234 | 6 | 1 |
| Rhodopseudomonas palustris CGA009 | ||
| Sinorhizobium meliloti 1021 | 6 | 1 |
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| uxuB |
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Gene: AZC_3347: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Bradyrhizobium japonicum USDA 110 Site: position = -47 score = 5.73088 sequence = TAATTGGCCTTACCAATTG Gene: blr6836: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: BBta_2118: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: BMEII0478: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: mlr1886: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: Meso_4497: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: NGR_b20770: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: SMb20749: D-mannonate oxidoreductase (EC 1.1.1.57) |
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D-mannonate oxidoreductase (EC 1.1.1.57) |
| CRON 2. | ||||||||||||||||
| blr3930 |
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Bradyrhizobium japonicum USDA 110 Site: position = -73 score = 5.53135 sequence = AAGCTGGTCAGACCAATTT Site: position = -59 score = 5.02672 sequence = AATTTGGACTGACCAGTTT Gene: blr3930: aminotransferase |
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aminotransferase |
| blr3931 |
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Gene: blr3931: blr3931; probable substrate-binding protein |
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blr3931; probable substrate-binding protein |
| blr3932 |
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Gene: blr3932: probable N,N-dimethylformamidase large subunit (EC 3.5.1.56) |
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Gene: Meso_4257: probable N,N-dimethylformamidase large subunit (EC 3.5.1.56) |
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probable N,N-dimethylformamidase large subunit (EC 3.5.1.56) |
| CRON 3. | ||||||||||||||||
| uxuR2-3 |
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Bradyrhizobium japonicum USDA 110 Site: position = -60 score = 5.53135 sequence = AAATTGGTCTGACCAGCTT Site: position = -74 score = 5.02672 sequence = AAACTGGTCAGTCCAAATT Gene: bll3929: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
| CRON 4. | ||||||||||||||||
| uxuR2-2 |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = 1 score = 4.47411 sequence = TGAATGGTCAGGCCAAAAT Site: position = -183 score = 5.20462 sequence = ATAATGGTCAAGCCAATTA Site: position = -205 score = 4.783 sequence = CAAATGGTTAGGCCGGTTT Gene: Atu2821: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
| garD |
Gene: Atu2822: D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7) |
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Gene: BMEII0485: D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7) |
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Gene: Meso_3970: D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7) |
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Gene: Xaut_1602: D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7) |
D-galactarate dehydratase/Altronate hydrolase (EC 4.2.1.7) |
| CRON 5. | ||||||||||||||||
| uxuR2 |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -64 score = 5.31022 sequence = AAATTGGTAAGACCATCTT Gene: Atu3252: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Bradyrhizobium japonicum USDA 110 Site: position = 10 score = 5.73088 sequence = CAATTGGTAAGGCCAATTA Gene: bll6835: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Rhizobium etli CFN 42 Site: position = -61 score = 5.68835 sequence = GAATTGGTCAGGCCAGTTG Gene: RHE_PF00067: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -62 score = 5.74843 sequence = TAATTGGTCAGGCCAGTTG Gene: pRL120399: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Rhizobium sp. NGR234 Site: position = -63 score = 5.42627 sequence = GAATTGGTATGACCACTTG Gene: NGR_b19310: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Sinorhizobium meliloti 1021 Site: position = -55 score = 5.42627 sequence = GAATTGGTATGACCACTTG Gene: SMb20441: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
| dctP |
Gene: Atu3253: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein |
Gene: AZC_2416: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein |
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Gene: bll6834: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein |
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Gene: RHE_PF00068: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein |
Gene: pRL120400: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein |
Gene: NGR_b19300: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein |
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Gene: SMb20442: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein |
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TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein |
| dctQ |
Gene: Atu3254: TRAP-type C4-dicarboxylate transport system, small permease component |
Gene: AZC_2417: TRAP-type C4-dicarboxylate transport system, small permease component |
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Gene: bll6833: TRAP-type C4-dicarboxylate transport system, small permease component |
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Gene: RHE_PF00069: TRAP-type C4-dicarboxylate transport system, small permease component |
Gene: pRL120401: TRAP-type C4-dicarboxylate transport system, small permease component |
Gene: NGR_b19290: TRAP-type C4-dicarboxylate transport system, small permease component |
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Gene: SMb20443: TRAP-type C4-dicarboxylate transport system, small permease component |
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TRAP-type C4-dicarboxylate transport system, small permease component |
| dctM |
Gene: Atu3255: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter |
Gene: AZC_2418: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter |
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Gene: bll6832: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter |
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Gene: RHE_PF00070: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter |
Gene: pRL120402: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter |
Gene: NGR_b19280: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter |
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Gene: SMb20444: TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter |
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TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter |
| idnD2 |
Gene: Atu3256: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
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Gene: RHE_PF00071: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
Gene: pRL120403: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
Gene: NGR_b19270: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
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Gene: SMb20445: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
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zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
| uxuA |
Gene: Atu3257: D-Mannonate dehydratase (EC 4.2.1.8) |
Gene: AZC_2768: D-Mannonate dehydratase (EC 4.2.1.8) |
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Gene: Meso_4498: D-Mannonate dehydratase (EC 4.2.1.8) |
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Gene: NGR_b19260: D-Mannonate dehydratase (EC 4.2.1.8) |
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Gene: SMb20446: D-Mannonate dehydratase (EC 4.2.1.8) |
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D-Mannonate dehydratase (EC 4.2.1.8) |
| idnD |
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Gene: AZC_2613: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Gene: bll6831: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
Gene: BBta_2124: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Gene: Xaut_2436: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
L-idonate 5-dehydrogenase (EC 1.1.1.264) |
| uxuA2 |
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Gene: bll6830: D-Mannonate dehydratase (EC 4.2.1.8) |
Gene: BBta_2123: D-Mannonate dehydratase (EC 4.2.1.8) |
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Gene: RHE_PB00006: D-Mannonate dehydratase (EC 4.2.1.8) |
Gene: pRL90057: D-Mannonate dehydratase (EC 4.2.1.8) |
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D-Mannonate dehydratase (EC 4.2.1.8) |
| CRON 6. | ||||||||||||||||
| rbsA |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -138 score = 5.20462 sequence = TAATTGGCTTGACCATTAT Site: position = -322 score = 4.47411 sequence = ATTTTGGCCTGACCATTCA Site: position = -116 score = 4.783 sequence = AAACCGGCCTAACCATTTG Gene: Atu2819: ABC transporter, nucleotide binding/ATPase protein (ribose) |
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ABC transporter, nucleotide binding/ATPase protein (ribose) |
| rbsC |
Gene: Atu2818: ABC transporter, permease protein (ribose) |
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Gene: mlr1694: ABC transporter, permease protein (ribose) |
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ABC transporter, permease protein (ribose) |
| rbsB |
Gene: Atu2817: ABC transporter, substrate binding protein (ribose) |
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ABC transporter, substrate binding protein (ribose) |
| Atu2816 |
Gene: Atu2816: oxidoreductase |
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oxidoreductase |
| Atu2815 |
Gene: Atu2815: hypothetical protein |
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hypothetical protein |
| idnD3 |
Gene: Atu2814: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
Gene: AZC_3279: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
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Gene: mlr3340: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
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Gene: RHE_CH00489: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
Gene: RL0515: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
Gene: NGR_c33710: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
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Gene: SMc02771: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
Gene: Xaut_0178: zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
zinc-binding dehydrogenase similar to L-idonate 5-dehydrogenase |
| uxaB |
Gene: Atu2813: altronate oxidoreductase |
Gene: AZC_3284: altronate oxidoreductase |
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Gene: Xaut_0173: altronate oxidoreductase |
altronate oxidoreductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |