Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NnrR in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type: Transcription factor
TF locus tag: Atu4380
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Regulog: NnrR - Rhizobiales
Statistics of regulated genes:
- Genes 18
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 110 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -181
Score: 4.8
Sequence: CTTTGCGAACAGGCAAAG
Position: -95
Score: 4.5
Sequence: GTTTGTTCCATCTCAAAT
Locus tag: Atu4382
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: Atu4381
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: Atu4380
Name: nnrR
Funciton: Nitric oxide-responding transcriptional regulator NnrR, Crp family
Atu4382
nirK
Copper-containing nitrite reductase (EC 1.7.2.1)
Atu4381
nirV
Nitrite reductase accessory protein NirV
Atu4380
nnrR
Nitric oxide-responding transcriptional regulator NnrR, Crp family
Position: -67
Score: 5
Sequence: CTTTGCGGTCGGTCAAAG
Locus tag: Atu8040
Name: null
Funciton: bsl3211; hypothetical protein
Atu8040
bsl3211; hypothetical protein
Position: -247
Score: 5
Sequence: CTTTGCGGTCGGTCAAAG
Locus tag: Atu4392
Name: nnrU
Funciton: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
Atu4392
nnrU
NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
Position: -159
Score: 4.5
Sequence: ATTTGAGATGGAACAAAC
Position: -73
Score: 4.8
Sequence: CTTTGCCTGTTCGCAAAG
Locus tag: Atu4383
Name: nnrS
Funciton: NnrS protein involved in response to NO
Atu4383
nnrS
NnrS protein involved in response to NO
Position: -76
Score: 5
Sequence: CTTTGACCGACCGCAAAG
Locus tag: Atu4391
Name: norE
Funciton: Nitric oxide reductase activation protein NorE
Locus tag: Atu8197
Name: norF
Funciton: Nitric oxide reductase activation protein NorF
Atu4391
norE
Nitric oxide reductase activation protein NorE
Atu8197
norF
Nitric oxide reductase activation protein NorF
Position: -75
Score: 4.9
Sequence: CTTTGCGTTCGCTCAAAC
Locus tag: Atu4396
Name: nnrX
Funciton: Putative lipid carrier protein
Locus tag: Atu4397
Name: PF01136
Funciton: Putative protease
Locus tag: Atu4398
Name: PF01136
Funciton: Putative protease
Locus tag: Atu4399
Name: null
Funciton: hypothetical protein
Atu4396
nnrX
Putative lipid carrier protein
Atu4397
PF01136
Putative protease
Atu4398
PF01136
Putative protease
Atu4399
hypothetical protein
Position: -20
Score: 4.7
Sequence: ATTTGCGGCAGCGCAAGG
Locus tag: Atu4394
Name: ubiD
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Locus tag: Atu4393
Name: ubiX
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)
Atu4394
ubiD
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Atu4393
ubiX
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)
Position: -138
Score: 4.9
Sequence: GTTTGCCAAATGGCAAAG
Locus tag: Atu4389
Name: norC
Funciton: Nitric-oxide reductase subunit C (EC 1.7.99.7)
Locus tag: Atu4388
Name: norB
Funciton: Nitric-oxide reductase subunit B (EC 1.7.99.7)
Locus tag: Atu4387
Name: norQ
Funciton: Nitric oxide reductase activation protein NorQ
Locus tag: Atu4386
Name: norD
Funciton: Nitric oxide reductase activation protein NorD
Atu4389
norC
Nitric-oxide reductase subunit C (EC 1.7.99.7)
Atu4388
norB
Nitric-oxide reductase subunit B (EC 1.7.99.7)
Atu4387
norQ
Nitric oxide reductase activation protein NorQ
Atu4386
norD
Nitric oxide reductase activation protein NorD
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