Regulog NnrR - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Denitrification |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - NnrR
- By TF family - CRP
- By effector - Nitric oxide
- By pathway - Denitrification
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 32 | 12 |
| Rhizobium sp. NGR234 | 22 | 9 |
| Rhizobium leguminosarum bv. viciae 3841 | ||
| Rhizobium etli CFN 42 | 14 | 5 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 18 | 8 |
| Mesorhizobium sp. BNC1 | 22 | 12 |
| Mesorhizobium loti MAFF303099 | ||
| Brucella melitensis 16M | 18 | 5 |
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 25 | 11 |
| Bradyrhizobium japonicum USDA 110 | 23 | 13 |
| Bradyrhizobium sp. BTAi1 | 21 | 10 |
| Nitrobacter winogradskyi Nb-255 | ||
| Azorhizobium caulinodans ORS 571 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| Meso_4284 |
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Mesorhizobium sp. BNC1 Site: position = -142 score = 5.55449 sequence = CTTTGCGCTAGCGCAAAC Gene: Meso_4284: hypothetical protein |
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hypothetical protein |
| SMa1259 |
Gene: SMa1259: hypothetical protein |
Gene: NGR_c09910: hypothetical protein |
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Gene: RHE_PF00521: hypothetical protein |
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Gene: Meso_4283: hypothetical protein |
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Gene: BMEII0994: hypothetical protein |
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hypothetical protein |
| PF10006 |
Gene: SMa1256: putative universal stress protein |
Gene: NGR_c09920: putative universal stress protein |
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Gene: RHE_PF00522: putative universal stress protein |
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Gene: Meso_4282: putative universal stress protein |
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Gene: BMEII0993: putative universal stress protein |
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putative universal stress protein |
| PF01883 |
Gene: SMa1255: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: NGR_c09930: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
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Gene: RHE_PF00523: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
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Gene: Meso_4281: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
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Gene: BMEII0992: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
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PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
| PF01152 |
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Gene: Meso_4280: Truncated hemoglobin |
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Gene: BMEII0398: Truncated hemoglobin |
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Gene: RPA2719: Truncated hemoglobin |
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Bradyrhizobium japonicum USDA 110 Site: position = -91 score = 4.95856 sequence = ATTTGCGCTGCGACAAAG Gene: bll6222: Truncated hemoglobin |
Gene: BBta_6298: Truncated hemoglobin |
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2
Xanthobacter autotrophicus Py2 Gene: Xaut_4232: Truncated hemoglobin Gene: Xaut_5029: Truncated hemoglobin |
Truncated hemoglobin |
| PF00034 |
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Sinorhizobium meliloti 1021 Site: position = -84 score = 4.68016 sequence = GTTTGCTCCCCGTCAAAG Gene: SMa1261: hypothetical protein |
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Rhizobium sp. NGR234 Site: position = -169 score = 4.18613 sequence = CTTTGACCAATATCAAGG Site: position = -123 score = 4.68016 sequence = GTTTGCTCGGCGTCAAAG Gene: NGR_c09900: hypothetical protein |
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Rhizobium etli CFN 42 Site: position = -114 score = 4.33181 sequence = ATTTGTCCGCTGTCAAAG Gene: RHE_PF00520: hypothetical protein |
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hypothetical protein |
| CRON 2. | ||||||||||||||||
| azu1 |
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*3
Mesorhizobium sp. BNC1 Site: position = -86 score = 4.91392 sequence = GTTTGCGTTGCAGCAAAG Gene: Meso_4276: Pseudoazurin precursor Site: position = -81 score = 5.20417 sequence = CTTTGCGCGAGCGCAAAT Gene: Meso_2245: Pseudoazurin precursor Gene: Meso_4110: Pseudoazurin precursor |
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Brucella melitensis 16M Site: position = -120 score = 4.12866 sequence = GTTTGATTTTAATCAAAG Gene: BMEII0965: Pseudoazurin precursor |
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Pseudoazurin precursor |
| nnrS |
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Sinorhizobium meliloti 1021 Site: position = -173 score = 4.8384 sequence = CTTTGAGGTGGAACAAAC Site: position = -72 score = 4.66159 sequence = CTTTGCCAATTGTCAAAG Gene: SMa1252: NnrS protein involved in response to NO |
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Rhizobium sp. NGR234 Site: position = -177 score = 4.66072 sequence = CTTTGAGGTGGAACAAAT Site: position = -73 score = 4.66159 sequence = CTTTGCCAATTGTCAAAG Gene: NGR_c09940: NnrS protein involved in response to NO |
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Rhizobium etli CFN 42 Site: position = -125 score = 5.06364 sequence = CTTTGACGTGGCGCAAAC Site: position = -102 score = 5.23563 sequence = GTTTGTGCCGGCACAAAG Site: position = -71 score = 4.65658 sequence = CTTTGCGTAATCTCAACG Gene: RHE_PF00524: NnrS protein involved in response to NO |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -159 score = 4.52797 sequence = ATTTGAGATGGAACAAAC Site: position = -73 score = 4.84965 sequence = CTTTGCCTGTTCGCAAAG Gene: Atu4383: NnrS protein involved in response to NO |
Gene: Meso_4275: NnrS protein involved in response to NO |
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Gene: BMEII0964: NnrS protein involved in response to NO |
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Rhodopseudomonas palustris CGA009 Site: position = -89 score = 4.99995 sequence = GTTTGCGCTGGCACAACC Gene: RPA1486: NnrS protein involved in response to NO |
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Bradyrhizobium japonicum USDA 110 Site: position = -79 score = 4.95864 sequence = GTTTGCGATAGCGCAAAA Gene: bll7083: NnrS protein involved in response to NO |
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Bradyrhizobium sp. BTAi1 Site: position = -100 score = 4.87784 sequence = GTTTGTGCTGGCACAACC Gene: BBta_6821: NnrS protein involved in response to NO |
Gene: Nwi_0557: NnrS protein involved in response to NO |
Gene: AZC_1433: NnrS protein involved in response to NO |
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NnrS protein involved in response to NO |
| CRON 3. | ||||||||||||||||
| norE |
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Sinorhizobium meliloti 1021 Site: position = -57 score = 4.88184 sequence = CTTTGATCGAGAGCAAAG Gene: SMa1279: Nitric oxide reductase activation protein NorE |
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Rhizobium sp. NGR234 Site: position = -69 score = 5.13321 sequence = CTTTGATCAAGCGCAAAG Gene: NGR_c09840: Nitric oxide reductase activation protein NorE |
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Rhizobium etli CFN 42 Site: position = -60 score = 5.02835 sequence = CTTTGCGATCGGTCAAAG Gene: RHE_PF00514: Nitric oxide reductase activation protein NorE |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -76 score = 5.04471 sequence = CTTTGACCGACCGCAAAG Gene: Atu4391: Nitric oxide reductase activation protein NorE |
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Brucella melitensis 16M Site: position = -51 score = 5.02229 sequence = CTTTGCCAAAACGCAAAG Gene: BMEII1001: Nitric oxide reductase activation protein NorE |
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Rhodopseudomonas palustris CGA009 Site: position = -86 score = 4.37002 sequence = GTTTGTCGGGGCGCAAGC Site: position = -49 score = 4.6981 sequence = GTTTGTCGCGGCACAACG Gene: RPA1453: Nitric oxide reductase activation protein NorE |
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Bradyrhizobium japonicum USDA 110 Site: position = -108 score = 4.95985 sequence = CGTTGCGTCGGCGCAAAC Site: position = -71 score = 4.48205 sequence = GTTTGTCCGCCGACAAAC Gene: blr3212: Nitric oxide reductase activation protein NorE |
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Bradyrhizobium sp. BTAi1 Site: position = -68 score = 4.84148 sequence = GTTTGTGCGGCGACAAAG Gene: BBta_2086: Nitric oxide reductase activation protein NorE |
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Nitric oxide reductase activation protein NorE |
| norF |
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Gene: Atu8197: Nitric oxide reductase activation protein NorF |
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Gene: BMEII1000: Nitric oxide reductase activation protein NorF |
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Gene: RPA1454: Nitric oxide reductase activation protein NorF |
Gene: bsr3213: Nitric oxide reductase activation protein NorF |
Gene: BBta_2087: Nitric oxide reductase activation protein NorF |
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Nitric oxide reductase activation protein NorF |
| CRON 4. | ||||||||||||||||
| nnrX |
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Sinorhizobium meliloti 1021 Site: position = -88 score = 5.12865 sequence = CTTTGCTCCAGCGCAAAT Gene: SMa1289: Putative lipid carrier protein |
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Rhizobium sp. NGR234 Site: position = -80 score = 5.14479 sequence = CTTTGCGCTGGCTCAAAT Gene: NGR_c09800: Putative lipid carrier protein |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -75 score = 4.94584 sequence = CTTTGCGTTCGCTCAAAC Gene: Atu4396: Putative lipid carrier protein |
Gene: Meso_4295: Putative lipid carrier protein |
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Gene: BMEII0958: Putative lipid carrier protein |
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Rhodopseudomonas palustris CGA009 Site: position = -67 score = 5.0959 sequence = CTTTGATCAGGCGCAAAG Gene: RPA0932: Putative lipid carrier protein |
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Bradyrhizobium japonicum USDA 110 Site: position = -50 score = 4.19294 sequence = CATTGTTCCCGCTCAAAT Gene: bll7628: Putative lipid carrier protein |
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Putative lipid carrier protein |
| PF01136 |
Gene: SMa1291: Putative protease |
Gene: NGR_c09790: Putative protease |
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Gene: Atu4397: Putative protease |
Gene: Meso_4296: Putative protease |
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Gene: BMEII0959: Putative protease |
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Gene: RPA0933: Putative protease |
Gene: bll7627: Putative protease |
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Putative protease |
| PF01136 |
Gene: SMa1292: Putative protease |
Gene: NGR_c09780: Putative protease |
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Gene: Atu4398: Putative protease |
Gene: Meso_4297: Putative protease |
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Gene: BMEII0960: Putative protease |
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Gene: RPA0934: Putative protease |
Gene: bll7626: Putative protease |
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Putative protease |
| SMa1294 |
Gene: SMa1294: hypothetical protein |
Gene: NGR_c09770: hypothetical protein |
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Gene: Atu4399: hypothetical protein |
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Mesorhizobium sp. BNC1 Site: position = -229 score = 5.40078 sequence = GTTTGCGCTGGCGCAAAC Gene: Meso_4290: hypothetical protein |
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hypothetical protein |
| Meso_4294 |
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Mesorhizobium sp. BNC1 Site: position = -70 score = 4.81419 sequence = CTTTGCGGAAGTGCAAAG Gene: Meso_4294: hypothetical protein |
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hypothetical protein |
| CRON 5. | ||||||||||||||||
| ubiD |
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Sinorhizobium meliloti 1021 Site: position = -107 score = 5.12865 sequence = ATTTGCGCTGGAGCAAAG Gene: SMa1288: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) |
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Rhizobium sp. NGR234 Site: position = -50 score = 5.14479 sequence = ATTTGAGCCAGCGCAAAG Gene: NGR_c09810: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -20 score = 4.7112 sequence = ATTTGCGGCAGCGCAAGG Gene: Atu4394: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) |
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Mesorhizobium sp. BNC1 Site: position = -65 score = 4.81419 sequence = CTTTGCACTTCCGCAAAG Gene: Meso_4293: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) |
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Gene: BMEII0957: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) |
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Rhodopseudomonas palustris CGA009 Site: position = -66 score = 5.0959 sequence = CTTTGCGCCTGATCAAAG Gene: RPA0931: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) |
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Bradyrhizobium japonicum USDA 110 Site: position = -15 score = 4.19294 sequence = ATTTGAGCGGGAACAATG Gene: blr7629: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) |
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3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-) |
| ubiX |
Gene: SMa1285: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) |
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Gene: Atu4393: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) |
Gene: Meso_4292: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) |
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Gene: BMEII0956: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) |
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Gene: RPA0930: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) |
Gene: blr7630: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) |
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3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) |
| CRON 6. | ||||||||||||||||
| PF02915 |
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Sinorhizobium meliloti 1021 Site: position = -107 score = 4.65523 sequence = CTTTGCGCCAGATCAACT Gene: SMa1178: Rubrerythrin |
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Rhodopseudomonas palustris CGA009 Site: position = -57 score = 5.04543 sequence = ATTTGCGCCAGCGCAAAT Gene: RPA2059: Rubrerythrin |
Gene: bll0313: Rubrerythrin |
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Bradyrhizobium sp. BTAi1 Site: position = -103 score = 4.83291 sequence = CGTTGCGCTGGATCAAAC Gene: BBta_6006: Rubrerythrin |
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Rubrerythrin |
| CRON 7. | ||||||||||||||||
| nosR |
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Sinorhizobium meliloti 1021 Site: position = -82 score = 4.65523 sequence = AGTTGATCTGGCGCAAAG Gene: SMa1179: Nitrous oxide reductase maturation protein |
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Brucella melitensis 16M Site: position = -233 score = 3.94462 sequence = CTTTGCGTCATATCAATA Gene: BMEII0975: Nitrous oxide reductase maturation protein |
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Rhodopseudomonas palustris CGA009 Site: position = -128 score = 5.04543 sequence = ATTTGCGCTGGCGCAAAT Gene: RPA2060: Nitrous oxide reductase maturation protein |
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Bradyrhizobium japonicum USDA 110 Site: position = -133 score = 4.51804 sequence = GCTTGATCCAGCGCAAAC Gene: blr0314: Nitrous oxide reductase maturation protein |
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Bradyrhizobium sp. BTAi1 Site: position = -181 score = 4.83291 sequence = GTTTGATCCAGCGCAACG Gene: BBta_6007: Nitrous oxide reductase maturation protein |
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Nitrous oxide reductase maturation protein |
| nosZ |
Gene: SMa1182: Nitrous-oxide reductase (EC 1.7.99.6) |
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Brucella melitensis 16M Gene: BMEII0974: Nitrous-oxide reductase (EC 1.7.99.6) Gene: BMEII0973: Nitrous-oxide reductase (EC 1.7.99.6) |
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Gene: RPA2061: Nitrous-oxide reductase (EC 1.7.99.6) |
Gene: blr0315: Nitrous-oxide reductase (EC 1.7.99.6) |
Gene: BBta_6008: Nitrous-oxide reductase (EC 1.7.99.6) |
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Nitrous-oxide reductase (EC 1.7.99.6) |
| nosD |
Gene: SMa1183: Nitrous oxide reductase maturation protein NosD |
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Gene: BMEII0972: Nitrous oxide reductase maturation protein NosD |
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Gene: RPA2062: Nitrous oxide reductase maturation protein NosD |
Gene: blr0316: Nitrous oxide reductase maturation protein NosD |
Gene: BBta_6009: Nitrous oxide reductase maturation protein NosD |
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Nitrous oxide reductase maturation protein NosD |
| nosF |
Gene: SMa1184: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Gene: BMEII0971: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Gene: RPA2063: Nitrous oxide reductase maturation protein NosF (ATPase) |
Gene: blr0317: Nitrous oxide reductase maturation protein NosF (ATPase) |
Gene: BBta_6010: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Nitrous oxide reductase maturation protein NosF (ATPase) |
| nosY |
Gene: SMa1185: Nitrous oxide reductase maturation transmembrane protein NosY |
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Gene: BMEII0970: Nitrous oxide reductase maturation transmembrane protein NosY |
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Gene: RPA2064: Nitrous oxide reductase maturation transmembrane protein NosY |
Gene: blr0318: Nitrous oxide reductase maturation transmembrane protein NosY |
Gene: BBta_6011: Nitrous oxide reductase maturation transmembrane protein NosY |
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Nitrous oxide reductase maturation transmembrane protein NosY |
| nosL |
Gene: SMa1186: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Gene: BMEII0969: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Gene: RPA2065: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
Gene: blr0319: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
Gene: BBta_6012: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
| BMEII0968 |
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Gene: BMEII0968: NOSX |
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NOSX |
| nosX |
Gene: SMa1188: Nitrous oxide reductase maturation periplasmic protein NosX |
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Gene: BMEII0967: Nitrous oxide reductase maturation periplasmic protein NosX |
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Gene: RPA2066: Nitrous oxide reductase maturation periplasmic protein NosX |
Gene: blr0320: Nitrous oxide reductase maturation periplasmic protein NosX |
Gene: BBta_6013: Nitrous oxide reductase maturation periplasmic protein NosX |
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Nitrous oxide reductase maturation periplasmic protein NosX |
| hmp |
Gene: SMa1191: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
| CRON 8. | ||||||||||||||||
| dnrN |
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Sinorhizobium meliloti 1021 Site: position = -141 score = 5.42238 sequence = GTTTGCGCAAGCGCAAAG Gene: SMa1195: Nitric oxide-dependent regulator DnrN or NorA |
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Nitric oxide-dependent regulator DnrN or NorA |
| nnrS2 |
Gene: SMa1194: NnrS protein involved in response to NO |
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Mesorhizobium sp. BNC1 Site: position = -83 score = 5.40078 sequence = GTTTGCGCCAGCGCAAAC Gene: Meso_4289: NnrS protein involved in response to NO |
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NnrS protein involved in response to NO |
| CRON 9. | ||||||||||||||||
| PF08984 |
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Mesorhizobium sp. BNC1 Site: position = -74 score = 5.13794 sequence = CTTTGCGCAAGCACAACG Gene: Meso_2247: nitric oxide reductase subunit C, cytochrome c |
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Bradyrhizobium japonicum USDA 110 Site: position = -64 score = 4.42059 sequence = GCTTGCGCTCCAACAAAG Gene: bsl7085: nitric oxide reductase subunit C, cytochrome c |
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Bradyrhizobium sp. BTAi1 Site: position = -101 score = 4.6981 sequence = GGTTGTGCCGCGACAAAG Gene: BBta_6823: nitric oxide reductase subunit C, cytochrome c |
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nitric oxide reductase subunit C, cytochrome c |
| CRON 10. | ||||||||||||||||
| hemN |
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Sinorhizobium meliloti 1021 Site: position = -85 score = 5.06888 sequence = CTTTGACATTGCGCAAAG Gene: SMa1266: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
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Rhizobium sp. NGR234 Site: position = -129 score = 4.68016 sequence = CTTTGACGCCGAGCAAAC Site: position = -83 score = 4.18613 sequence = CCTTGATATTGGTCAAAG Gene: NGR_c09890: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
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Gene: RHE_PD00262: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
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Gene: mlr6390: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
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*2
Bradyrhizobium japonicum USDA 110 Site: position = -74 score = 4.8433 sequence = GTTTGACATAACGCAAAG Gene: bll2007: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Site: position = -142 score = 5.052 sequence = CTTTGCGCGAGCGCAATG Site: position = -104 score = 5.02105 sequence = CTTTGCGCGAGCGCAAGG Gene: bll7086: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
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Bradyrhizobium sp. BTAi1 Site: position = -160 score = 5.19295 sequence = CTTTGAGGAAGCGCAAAG Site: position = -87 score = 4.63485 sequence = CTTTGAGCAGGCTCAAGG Gene: BBta_6824: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
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Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
| CRON 11. | ||||||||||||||||
| norC |
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Sinorhizobium meliloti 1021 Site: position = -145 score = 4.92226 sequence = GTTTGCCGAAACGCAAAG Gene: SMa1276: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Rhizobium sp. NGR234 Site: position = -142 score = 4.4565 sequence = GTTTGCAGAAACGCAAAG Gene: NGR_c09850: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Rhizobium etli CFN 42 Site: position = -112 score = 4.73877 sequence = CTTTGCGAATTAACAAAG Gene: RHE_PF00515: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -138 score = 4.87202 sequence = GTTTGCCAAATGGCAAAG Gene: Atu4389: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Brucella melitensis 16M Site: position = -144 score = 4.89018 sequence = CTTTGCCTATTCGCAAAG Gene: BMEII0999: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Rhodopseudomonas palustris CGA009 Site: position = -101 score = 5.03803 sequence = CGTTGAGCCAGCACAAAG Gene: RPA1455: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Bradyrhizobium japonicum USDA 110 Site: position = -89 score = 4.61739 sequence = CATTGCGCCCTGACAAAG Gene: blr3214: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Bradyrhizobium sp. BTAi1 Site: position = -85 score = 4.80128 sequence = CGTTGCGCCCCGACAAAG Gene: BBta_2088: Nitric-oxide reductase subunit C (EC 1.7.99.7) |
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Nitric-oxide reductase subunit C (EC 1.7.99.7) |
| norB |
Gene: SMa1273: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
Gene: NGR_c09860: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
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Gene: RHE_PF00516: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
Gene: Atu4388: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
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Gene: BMEII0998: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
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Gene: RPA1456: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
Gene: blr3215: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
Gene: BBta_2089: Nitric-oxide reductase subunit B (EC 1.7.99.7) |
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Nitric-oxide reductase subunit B (EC 1.7.99.7) |
| norQ |
Gene: SMa1272: Nitric oxide reductase activation protein NorQ |
Gene: NGR_c09870: Nitric oxide reductase activation protein NorQ |
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Gene: RHE_PF00517: Nitric oxide reductase activation protein NorQ |
Gene: Atu4387: Nitric oxide reductase activation protein NorQ |
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Gene: BMEII0997: Nitric oxide reductase activation protein NorQ |
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Gene: RPA1457: Nitric oxide reductase activation protein NorQ |
Gene: blr3216: Nitric oxide reductase activation protein NorQ |
Gene: BBta_2090: Nitric oxide reductase activation protein NorQ |
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Nitric oxide reductase activation protein NorQ |
| norD |
Gene: SMa1269: Nitric oxide reductase activation protein NorD |
Gene: NGR_c09880: Nitric oxide reductase activation protein NorD |
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Gene: RHE_PF00518: Nitric oxide reductase activation protein NorD |
Gene: Atu4386: Nitric oxide reductase activation protein NorD |
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Gene: BMEII0996: Nitric oxide reductase activation protein NorD |
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Gene: RPA1458: Nitric oxide reductase activation protein NorD |
Gene: blr3217: Nitric oxide reductase activation protein NorD |
Gene: BBta_2091: Nitric oxide reductase activation protein NorD |
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Nitric oxide reductase activation protein NorD |
| CRON 12. | ||||||||||||||||
| nirK |
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Sinorhizobium meliloti 1021 Site: position = -191 score = 4.66159 sequence = CTTTGACAATTGGCAAAG Site: position = -90 score = 4.8384 sequence = GTTTGTTCCACCTCAAAG Gene: SMa1250: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Rhizobium sp. NGR234 Site: position = -195 score = 4.66159 sequence = CTTTGACAATTGGCAAAG Site: position = -91 score = 4.66072 sequence = ATTTGTTCCACCTCAAAG Gene: NGR_c09950: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Rhizobium etli CFN 42 Site: position = -148 score = 4.65658 sequence = CGTTGAGATTACGCAAAG Site: position = -117 score = 5.23563 sequence = CTTTGTGCCGGCACAAAC Site: position = -94 score = 5.06364 sequence = GTTTGCGCCACGTCAAAG Gene: RHE_PF00525: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -181 score = 4.84965 sequence = CTTTGCGAACAGGCAAAG Site: position = -95 score = 4.52797 sequence = GTTTGTTCCATCTCAAAT Gene: Atu4382: Copper-containing nitrite reductase (EC 1.7.2.1) |
*2
Mesorhizobium sp. BNC1 Site: position = -234 score = 4.15318 sequence = CTTTGCGCGACGGGAACT Site: position = -86 score = 5.51718 sequence = GTTTGCGCCAGCGCAAAG Gene: Meso_4273: Copper-containing nitrite reductase (EC 1.7.2.1) Site: position = -175 score = 4.9493 sequence = CTTTGATCCAGCGCAACG Site: position = -82 score = 5.12865 sequence = ATTTGCGCCAGAGCAAAG Gene: Meso_2243: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Brucella melitensis 16M Site: position = -187 score = 4.84206 sequence = CTTTGTCTTAACGCAAAC Site: position = -28 score = 4.66887 sequence = CTTGGTCCTATCGCAAAG Gene: BMEII0988: Copper-containing nitrite reductase (EC 1.7.2.1) |
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*2
Rhodopseudomonas palustris CGA009 Gene: RPA3306: Copper-containing nitrite reductase (EC 1.7.2.1) Site: position = -190 score = 4.45254 sequence = CTTTGTCGCGCAACAACG Site: position = -84 score = 4.57165 sequence = GCTTGTGCTGGGACAAAC Gene: RPA4145: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Bradyrhizobium japonicum USDA 110 Site: position = -76 score = 4.43953 sequence = GCTTGTTGCAGCGCAAAC Gene: blr7089: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Bradyrhizobium sp. BTAi1 Site: position = -83 score = 4.31741 sequence = GCTTGTTGCAGCACAAAC Gene: BBta_6826: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Copper-containing nitrite reductase (EC 1.7.2.1) |
| nirV |
2
Sinorhizobium meliloti 1021 Gene: SMa2159: Nitrite reductase accessory protein NirV Gene: SMa1247: Nitrite reductase accessory protein NirV |
Gene: NGR_c09960: Nitrite reductase accessory protein NirV |
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Gene: RHE_PF00526: Nitrite reductase accessory protein NirV |
Gene: Atu4381: Nitrite reductase accessory protein NirV |
2
Mesorhizobium sp. BNC1 Gene: Meso_4272: Nitrite reductase accessory protein NirV Gene: Meso_0576: Nitrite reductase accessory protein NirV |
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Gene: BMEII0987: Nitrite reductase accessory protein NirV |
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Gene: RPA4146: Nitrite reductase accessory protein NirV |
Gene: blr7090: Nitrite reductase accessory protein NirV |
Gene: BBta_6827: Nitrite reductase accessory protein NirV |
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Nitrite reductase accessory protein NirV |
| nnrR |
Gene: SMa1245: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
Gene: NGR_c09970: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
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Gene: RHE_PF00527: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
Gene: Atu4380: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
*2
Mesorhizobium sp. BNC1 Site: position = -143 score = 4.91392 sequence = CTTTGCTGCAACGCAAAC Gene: Meso_4277: Nitric oxide-responding transcriptional regulator NnrR, Crp family Site: position = -55 score = 5.20417 sequence = ATTTGCGCTCGCGCAAAG Gene: Meso_2246: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
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Gene: BMEII0986: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
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Rhodopseudomonas palustris CGA009 Site: position = -229 score = 4.32131 sequence = ATTTGCGGTTCGGGAAAG Gene: RPA4143: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
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Bradyrhizobium japonicum USDA 110 Site: position = -68 score = 4.95864 sequence = TTTTGCGCTATCGCAAAC Gene: blr7084: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
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Bradyrhizobium sp. BTAi1 Site: position = -86 score = 4.87784 sequence = GGTTGTGCCAGCACAAAC Gene: BBta_6822: Nitric oxide-responding transcriptional regulator NnrR, Crp family |
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Nitric oxide-responding transcriptional regulator NnrR, Crp family |
| nnrU |
Gene: SMa1283: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
Gene: NGR_c09820: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Gene: RHE_PF00528: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -247 score = 5.04471 sequence = CTTTGCGGTCGGTCAAAG Gene: Atu4392: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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Rhodopseudomonas palustris CGA009 Site: position = -108 score = 4.12528 sequence = GGTTGACGCACGACAACG Gene: RPA1485: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
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NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) |
| bsr7087 |
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Bradyrhizobium japonicum USDA 110 Site: position = -117 score = 5.02105 sequence = CCTTGCGCTCGCGCAAAG Site: position = -79 score = 5.052 sequence = CATTGCGCTCGCGCAAAG Gene: bsr7087: bsr7087; unknown protein |
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bsr7087; unknown protein |
| PF04314 |
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Gene: blr7088: Copper metallochaperone, bacterial analog of Cox17 protein |
Gene: BBta_4537: Copper metallochaperone, bacterial analog of Cox17 protein |
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Copper metallochaperone, bacterial analog of Cox17 protein |
| azu1 |
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Sinorhizobium meliloti 1021 Site: position = -91 score = 4.18083 sequence = ATTTGACAAGCATCAAAG Gene: SMa1243: Pseudoazurin precursor |
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Rhizobium sp. NGR234 Site: position = -91 score = 4.3553 sequence = GTTTGACAGACATCAAAG Gene: NGR_c09980: Pseudoazurin precursor |
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Pseudoazurin precursor |
| NGR_c09830 |
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Rhizobium sp. NGR234 Site: position = -63 score = 5.13321 sequence = CTTTGCGCTTGATCAAAG Gene: NGR_c09830: bsl3211; hypothetical protein |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -67 score = 5.04471 sequence = CTTTGCGGTCGGTCAAAG Gene: Atu8040: bsl3211; hypothetical protein |
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Rhodopseudomonas palustris CGA009 Site: position = -106 score = 4.6981 sequence = CGTTGTGCCGCGACAAAC Site: position = -69 score = 4.37002 sequence = GCTTGCGCCCCGACAAAC Gene: RPA1452: bsl3211; hypothetical protein |
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Bradyrhizobium japonicum USDA 110 Site: position = -20 score = 4.48205 sequence = GTTTGTCGGCGGACAAAC Site: position = 17 score = 4.95985 sequence = GTTTGCGCCGACGCAACG Gene: bsl3211: bsl3211; hypothetical protein |
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Bradyrhizobium sp. BTAi1 Site: position = -67 score = 4.84148 sequence = CTTTGTCGCCGCACAAAC Gene: BBta_2085: bsl3211; hypothetical protein |
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bsl3211; hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |