Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ubiX gene

Properties
Regulog: NnrR - Rhizobiales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria
Built upon 110 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Agrobacterium tumefaciens str. C58 (Cereon)
Position: -20
Score: 4.7112
Sequence: ATTTGCGGCAGCGCAAGG
Locus tag: Atu4394
Name: ubiD
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Locus tag: Atu4393
Name: ubiX
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)
ubiD-ubiX -20 4.7 ATTTGCGGCAGCGCAAGG Atu4394
Bradyrhizobium japonicum USDA 110
Position: -15
Score: 4.19294
Sequence: ATTTGAGCGGGAACAATG
Locus tag: blr7629
Name: ubiD
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Locus tag: blr7630
Name: ubiX
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)
ubiD-ubiX -15 4.2 ATTTGAGCGGGAACAATG blr7629
Mesorhizobium sp. BNC1
Position: -65
Score: 4.81419
Sequence: CTTTGCACTTCCGCAAAG
Locus tag: Meso_4293
Name: ubiD
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Locus tag: Meso_4292
Name: ubiX
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)
ubiD-ubiX -65 4.8 CTTTGCACTTCCGCAAAG Meso_4293
Rhodopseudomonas palustris CGA009
Position: -66
Score: 5.0959
Sequence: CTTTGCGCCTGATCAAAG
Locus tag: RPA0931
Name: ubiD
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Locus tag: RPA0930
Name: ubiX
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)
ubiD-ubiX -66 5.1 CTTTGCGCCTGATCAAAG RPA0931
Sinorhizobium meliloti 1021
Position: -107
Score: 5.12865
Sequence: ATTTGCGCTGGAGCAAAG
Locus tag: SMa1288
Name: ubiD
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Locus tag: SMa1285
Name: ubiX
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)
ubiD-ubiX -107 5.1 ATTTGCGCTGGAGCAAAG SMa1288