Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type: Transcription factor
TF locus tag: Atu1395
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Rhizobiales
Statistics of regulated genes:
- Genes 25
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 212 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -9
Score: 5.3
Sequence: GTTCTTGTTTTGATC
Locus tag: Atu0365
Name: rmuC
Funciton: DNA recombination protein RmuC
Atu0365
rmuC
DNA recombination protein RmuC
Position: -52
Score: 5.1
Sequence: GTTCTGTATTTGTTT
Locus tag: Atu1395
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Atu1395
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -149
Score: 5.4
Sequence: GTTCCTTTTTTGTTC
Locus tag: Atu1513
Name: uvrA
Funciton: Excinuclease ABC subunit A
Atu1513
uvrA
Excinuclease ABC subunit A
Position: -179
Score: 5.2
Sequence: GTTCTTGTATTGTTC
Locus tag: Atu0721
Name: PF04055
Funciton: Radical SAM domain protein
Atu0721
PF04055
Radical SAM domain protein
Position: -142
Score: -0.2
Sequence: AAACGAAAGCAGAAC
Position: -74
Score: 0.8
Sequence: GAACAAATAGAGTAC
Locus tag: Atu1874
Name: recA
Funciton: Recombinase A
Atu1874
recA
Recombinase A
Position: -24
Score: -0.4
Sequence: AAACAAGAAGAAAAC
Locus tag: Atu1077
Name: radA
Funciton: DNA repair protein RadA
Atu1077
radA
DNA repair protein RadA
Position: -57
Score: 0.1
Sequence: GAATAAAAGCAGAAC
Locus tag: Atu2057
Name: uvrD
Funciton: ATP-dependent DNA helicase II
Atu2057
uvrD
ATP-dependent DNA helicase II
Position: -291
Score: 0.5
Sequence: GAACAAAAACGGAAT
Locus tag: Atu2753
Name: mgpS
Funciton: ATP-dependent helicase
Atu2753
mgpS
ATP-dependent helicase
Position: -239
Score: 0.9
Sequence: GAACAAAATGAGAAC
Locus tag: Atu1292
Name: dnaE
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Atu1292
dnaE
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -76
Score: 1.4
Sequence: GAACAAACAATGAAC
Locus tag: Atu5098
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: Atu5099
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: Atu5100
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Atu5098
imuA
Predicted RecA/RadA recombinase
Atu5099
imuB
DNA polymerase-like protein PA0670
Atu5100
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -53
Score: 0.8
Sequence: GAACAAAACAAGAAC
Locus tag: Atu3230
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: Atu3229
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: Atu3228
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Atu3230
imuA
Predicted RecA/RadA recombinase
Atu3229
imuB
DNA polymerase-like protein PA0670
Atu3228
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -58
Score: 4.5
Sequence: ATTCATCTTTCGTTC
Locus tag: Atu2026
Name: PF01443
Funciton: RecD-like DNA helicase Atu2026
Atu2026
PF01443
RecD-like DNA helicase Atu2026
Position: -134
Score: 5.1
Sequence: GTTCAGCATTTGTTC
Locus tag: Atu4619
Name: uvrD2
Funciton: ATP-dependent DNA helicase II
Atu4619
uvrD2
ATP-dependent DNA helicase II
Position: -215
Score: 4.9
Sequence: GTTCACTATATGTTC
Locus tag: Atu2182
Name: greA
Funciton: Transcription elongation factor GreA
Atu2182
greA
Transcription elongation factor GreA
Position: -71
Score: 4.5
Sequence: GTTTCCTTTTTGTAC
Locus tag: Atu2001
Name: uvrB
Funciton: Excinuclease ABC subunit B
Atu2001
uvrB
Excinuclease ABC subunit B
Position: -88
Score: 5.2
Sequence: GTTCTGGTTTTGTTT
Locus tag: Atu1294
Name: dinP
Funciton: DNA polymerase IV (EC 2.7.7.7)
Atu1294
dinP
DNA polymerase IV (EC 2.7.7.7)
Position: -172
Score: 0.9
Sequence: GAACAAAAAAGGAAC
Locus tag: Atu1512
Name: ssb
Funciton: Single-stranded DNA-binding protein
Atu1512
ssb
Single-stranded DNA-binding protein
Position: -58
Score: 5
Sequence: GTTGTCGTTTTGTTC
Locus tag: Atu3724
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Atu3723
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: Atu3722
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
Atu3724
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Atu3723
ruvA
Holliday junction DNA helicase RuvA
Atu3722
ruvB
Holliday junction DNA helicase RuvB
Position: -170
Score: 4.4
Sequence: GCTCCCGGTTTGTTC
Position: -97
Score: 5
Sequence: GTTCTTGTTTTATTC
Locus tag: Atu0311
Name: yifB
Funciton: Conserved hypothetical protein
Atu0311
yifB
Conserved hypothetical protein
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