Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FnrN/FixK/AadR in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type: Transcription factor
TF locus tag: Atu1602
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FnrN/FixK/AadR - Rhizobiales
Statistics of regulated genes:
- Genes 51
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -208
Score: 4
Sequence: TATTTGCCTTTTATCAAGAA
Position: -144
Score: 4.9
Sequence: ACTTTGACTTCAATCAAATT
Locus tag: Atu1602
Name: fnrN
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
Atu1602
fnrN
Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
Position: -72
Score: 5.2
Sequence: CACTTGATGTAAGTCAAGGA
Locus tag: Atu1530
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: Atu1529
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: Atu1528
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Atu1527
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Atu1530
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Atu1529
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
Atu1528
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Atu1527
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Position: -131
Score: 5.5
Sequence: TTCTTGATCTGGATCAAGGT
Locus tag: Atu1537
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: Atu1536
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: Atu1535
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: Atu1534
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Atu1537
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Atu1536
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Atu1535
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Atu1534
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -148
Score: 5.2
Sequence: AGTTTGACGTAAATCAAGGT
Locus tag: Atu0973
Name: ccmI
Funciton: Cytochrome c heme lyase subunit CcmI
Locus tag: Atu0974
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: Atu0975
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Atu0976
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmH
Atu0973
ccmI
Cytochrome c heme lyase subunit CcmI
Atu0974
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
Atu0975
ccmF
Cytochrome c heme lyase subunit CcmF
Atu0976
ccmH
Cytochrome c heme lyase subunit CcmH
Position: -140
Score: 4.9
Sequence: CATTTGATCCATCTCAATCG
Locus tag: Atu3191
Name: ompW
Funciton: Outer membrane protein W precursor
Atu3191
ompW
Outer membrane protein W precursor
Position: -166
Score: 5
Sequence: TTTTTGATGTGAATCAATTT
Locus tag: Atu2613
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
Atu2613
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -209
Score: 3.8
Sequence: GCCTTTATGAAAAGCAAGCG
Locus tag: Atu0769
Name: ctaB
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Locus tag: Atu8013
Name: ctaX
Funciton: Hypothetical protein in cta gene cluster
Locus tag: Atu0770
Name: ctaG
Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Atu0771
Name: ctaE
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Atu0769
ctaB
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Atu8013
ctaX
Hypothetical protein in cta gene cluster
Atu0770
ctaG
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Atu0771
ctaE
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -178
Score: 4.2
Sequence: GGATTGATCAATGGCAAAAT
Position: -71
Score: 5.1
Sequence: TGATTGATCTAGATCAGACG
Locus tag: Atu0767
Name: ctaC
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Atu0768
Name: ctaD
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Atu0767
ctaC
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Atu0768
ctaD
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Position: -92
Score: 4.7
Sequence: ATTTTGACGCAGGTCAAAAA
Locus tag: Atu4088
Name: cydR
Funciton: Predicted transcriptional regulator, ArsR family
Locus tag: Atu4089
Name: cydD
Funciton: ATP-binding/permease protein CydD
Locus tag: Atu4090
Name: cydC
Funciton: ATP-binding/permease protein CydC
Locus tag: Atu4091
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: Atu4092
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: Atu8036
Name: cydX
Funciton: Cytochrome d ubiquinol oxidase subunit CydX (EC 1.10.3.-)
Atu4088
cydR
Predicted transcriptional regulator, ArsR family
Atu4089
cydD
ATP-binding/permease protein CydD
Atu4090
cydC
ATP-binding/permease protein CydC
Atu4091
cydA
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Atu4092
cydB
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Atu8036
cydX
Cytochrome d ubiquinol oxidase subunit CydX (EC 1.10.3.-)
Position: -164
Score: 4.1
Sequence: ATATTGTTGCCAATCAATGC
Locus tag: Atu1268
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: Atu1269
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: Atu1270
Name: nuoC
Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: Atu1271
Name: PF04828
Funciton: Hypothetical protein
Locus tag: Atu1272
Name: nouD
Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: Atu1273
Name: Atu1273
Funciton: Conserved hypothetical protein
Locus tag: Atu1274
Name: nuoE
Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: Atu1275
Name: nuoF
Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: Atu1276
Name: nuoG
Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: Atu1277
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: Atu1278
Name: nuoI
Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: Atu1279
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: Atu1280
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: Atu1281
Name: nuoL
Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: Atu1282
Name: nuoM
Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: Atu1283
Name: nuoN
Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Atu1268
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Atu1269
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Atu1270
nuoC
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Atu1271
PF04828
Hypothetical protein
Atu1272
nouD
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Atu1273
Atu1273
Conserved hypothetical protein
Atu1274
nuoE
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Atu1275
nuoF
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Atu1276
nuoG
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Atu1277
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Atu1278
nuoI
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Atu1279
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Atu1280
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Atu1281
nuoL
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Atu1282
nuoM
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Atu1283
nuoN
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -93
Score: 4.1
Sequence: GATTTGCGATGGGTCAATTC
Locus tag: Atu0626
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Atu0626
adhA
Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Position: -174
Score: 5.2
Sequence: TGTTTGATCGAAATCAATTC
Locus tag: Atu2394
Name: sinR
Funciton: Biofilm formation transcriptional regulator SinR, Crp Family
Atu2394
sinR
Biofilm formation transcriptional regulator SinR, Crp Family
Position: -93
Score: 4
Sequence: CATTTGATTTTTCGCAAAGA
Locus tag: Atu2283
Name: paz
Funciton: pseudoazurin
Atu2283
paz
pseudoazurin
Position: -96
Score: 4.3
Sequence: AGTTTGTTCCATCTCAAATT
Locus tag: Atu4382
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: Atu4381
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Atu4382
nirK
Copper-containing nitrite reductase (EC 1.7.2.1)
Atu4381
nirV
Nitrite reductase accessory protein NirV
Position: -129
Score: 4.3
Sequence: TAGTTGATTCATATCATTTG
Locus tag: Atu4380
Name: nnrR
Funciton: Nitric oxide stress response transcriptional regulator NnrR, Crp family
Atu4380
nnrR
Nitric oxide stress response transcriptional regulator NnrR, Crp family
Position: -68
Score: 4.3
Sequence: TCTTTGCGGTCGGTCAAAGA
Locus tag: Atu8040
Name: Atu8040
Funciton: Conserved hypothetical protein
Locus tag: Atu4392
Name: nnrU
Funciton: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
Atu8040
Atu8040
Conserved hypothetical protein
Atu4392
nnrU
NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
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