Regulon of HypR in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type:	Transcription factor
TF locus tag:	Atu4674
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	Proline
Regulog:	HypR - Rhizobiales
Statistics of regulated genes:
- Genes	10
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 18 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - HypR
By TF family - GntR/Others
By effector - Proline
By pathway - Proline and 4-hydrohyproline utilization

Regulated operons
	Locus Tag	Name	Function
Position: -232 Score: 4.2 Sequence: ATGAGTATACAAAA Position: -52 Score: 3.5 Sequence: CTTTGTATACTTTA Position: -41 Score: 3.7 Sequence: TTATGTATTCAAAA Locus tag: Atu4676 Name: hypS Funciton: Putative L-lactate/Malate dehydrogenase
	Atu4676	hypS	Putative L-lactate/Malate dehydrogenase
Position: -100 Score: 4.2 Sequence: TTTTGTATACTCAT Locus tag: Atu4678 Name: hypM Funciton: Predicted hydroxyproline ABC transporter, substrate-binding protein Locus tag: Atu4679 Name: hypN Funciton: Predicted hydroxyproline ABC transporter, permease protein Locus tag: Atu4680 Name: hypP Funciton: Predicted hydroxyproline ABC transporter, permease protein Locus tag: Atu4681 Name: hypQ Funciton: Predicted hydroxyproline ABC transporter, ATP-binding protein Locus tag: Atu4682 Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster Locus tag: Atu4683 Name: hypX Funciton: Putative citrate/isocitrate isomerase or aconitase ## predicted from clustering to proline racemase Locus tag: Atu4684 Name: hypY Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8), possible pseudogene, inactive
	Atu4678	hypM	Predicted hydroxyproline ABC transporter, substrate-binding protein
	Atu4679	hypN	Predicted hydroxyproline ABC transporter, permease protein
	Atu4680	hypP	Predicted hydroxyproline ABC transporter, permease protein
	Atu4681	hypQ	Predicted hydroxyproline ABC transporter, ATP-binding protein
	Atu4682	hypO	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
	Atu4683	hypX	Putative citrate/isocitrate isomerase or aconitase ## predicted from clustering to proline racemase
	Atu4684	hypY	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8), possible pseudogene, inactive
Position: -25 Score: 4.7 Sequence: TTATGTCGACAAGA Locus tag: Atu4674 Name: hypR Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family
	Atu4674	hypR	Predicted regulator for proline and hydrohyproline utilization, GntR family
Position: -99 Score: 5.1 Sequence: TCTTGTCGACAAAT Locus tag: Atu4675 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
	Atu4675	hypD	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted

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