Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Rhizobium leguminosarum bv. viciae 3841

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AduR Adenosine Adenosine utilization 1 1
TF AfrR 1,5-Anhydro-d-Fructose utilization 1 2
TF AglR Alpha-glucoside; Maltose; Trehalose; Sucrose Alpha-glucosides utilization 3 5
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 1
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF EutR Ethanolamine Ethanolamine utilization 3 4
TF EutR Ectoine utilization 3 4
TF FixJ Oxygen Oxidative stress response; Nitrogen fixation 7 6
TF FixJ Oxygen Oxidative stress response 1 1
TF FnrN/FixK/AadR Oxygen Oxidative stress response; Nitrogen fixation 26 18
TF HrcA Heat shock Heat shock response 3 3
TF HutC cis-Urocanic acid Histidine utilization 7 5
TF HypR Proline Proline and 4-hydrohyproline utilization 5 2
TF IdnR L-idonate Idonate utilization 5 7
TF Irr Heme Iron homeostasis 15 9
TF LexA DNA damage SOS response 23 20
TF LiuR Branched-chain amino acid degradation 10 11
TF MdcY Malonate metabolism 2 2
TF Mll0059 2 2
TF Mll1683 Sugar utilization 4 4
TF MocR rhizopine Rhizopine catabolism 2 4
TF ModE Molybdate Molybdenum homeostasis 1 2
TF Mur Iron ion, (Fe2+) Manganese homeostasis 2 3
TF NadQ NAD biosynthesis 1 2
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 6 1
TF NifA Nitrogen fixation 6 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 9 6
TF PckR Central carbohydrate metabolism 15 12
TF PhnF Phosphonate utilization 3 2
TF PsiR Psicose Psicose utilization 3 4
TF RL3595 Sugar utilization 2 2
TF RL4253 Sugar utilization 2 4
TF RbsR2 Ribose Ribose utilization 1 2
TF RhaR Rhamnose Rhamnose utilization 2 7
TF RhiR Rhamogalacturonate oligosaccharides Rhamnogalacturonides utilization 2 4
TF RirA Iron ion, (Fe2+) Iron homeostasis 21 25
TF RutR Uracil Pyrimidine utilization 7 5
TF SMb20039 1 1
TF SMb20537 Sugar utilization 2 2
TF SMb20667 Sugar utilization 2 5
TF SMb20717 Sugar utilization 2 4
TF SMb21598 Sugar utilization 2 2
TF SMb21706 Sugar utilization 3 6
TF SMc04260 Sugar utilization 3 3
TF SahR S-adenosylhomocysteine Methionine metabolism 4 4
TF SocR Mannopine; Deoxyfructosyl glutamine Santhopine utilization 2 4
TF SoxR Paraquat Superoxide stress response 6 4
TF UxuR2 Galacturonate utilization 4 1
TF VanR Vanillate Vanillate utilization 2 4
TF XylR Xylose Xylose utilization 4 2
TF XylR Xylose Xylose utilization 4 4
TF YrdX 3 5
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 5 5
TF pRL90265 Sugar utilization 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 10 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 3 3
RNA Glycine Glycine Glycine metabolism 3 2
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA mini-ykkC Multidrug resistance 2 2
RNA serC Serine biosynthesis 1 1
RNA speF Ornithine degradation 1 1
RNA ybhL 1 1
RNA ykkC-yxkD Multidrug resistance 1 1
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