Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PckR in Rhizobium leguminosarum bv. viciae 3841

Properties
Regulator type: Transcription factor
TF locus tag: RL4145
Regulator family: LacI
Regulation mode: repressor
Biological process: Central carbohydrate metabolism
Effector:
Regulog: PckR - Rhizobiales
Statistics of regulated genes:
- Genes 25
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 99 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -81
Score: 4.5
Sequence: AAATATAATCGATTAGCATT
Locus tag: RL4061
Name: COG5480
Funciton: Predicted integral membrane protein
Locus tag: RL4060
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
RL4061
COG5480
Predicted integral membrane protein
RL4060
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -140
Score: 4.5
Sequence: AATGCTAATCGATTATATTT
Locus tag: RL4062
Name: COG3931
Funciton: Predicted N-formylglutamate amidohydrolase
Locus tag: RL4063
Name: COG3492
Funciton: hypothetical protein
RL4062
COG3931
Predicted N-formylglutamate amidohydrolase
RL4063
COG3492
hypothetical protein
Position: -88
Score: 4.1
Sequence: CGATTAAATCTTTTAATTAA
Locus tag: RL4145
Name: pckR
Funciton: Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
Locus tag: RL4144
Name: hpr
Funciton: Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
RL4145
pckR
Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
RL4144
hpr
Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -168
Score: 4.4
Sequence: AACGCGAATCGATTAAATTA
Locus tag: RL4446
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: RL4445
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: RL4444
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: RL4443
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
RL4446
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
RL4445
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
RL4444
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
RL4443
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -39
Score: 5.1
Sequence: CGGTCAAATCGATTGAATTG
Locus tag: RL0183
Name: mgsA
Funciton: Methylglyoxal synthase (EC 4.2.3.3)
Locus tag: RL0182
Name: glk
Funciton: Glucokinase (EC 2.7.1.2)
RL0183
mgsA
Methylglyoxal synthase (EC 4.2.3.3)
RL0182
glk
Glucokinase (EC 2.7.1.2)
Position: -32
Score: 4.7
Sequence: GAATTCAATCGTTTCAAGGA
Locus tag: RL4162
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
RL4162
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
Position: -156
Score: 5.3
Sequence: ACTTTCAAACGATTGAATTG
Position: -137
Score: 4.9
Sequence: GAATTCAATCGTTTCAATGA
Locus tag: RL4012
Name: fba
Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
RL4012
fba
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Position: -57
Score: 5.5
Sequence: TTTTTAAATCGATTAGATTA
Locus tag: RL0753
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: RL0752
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: RL0751
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
RL0753
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
RL0752
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
RL0751
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Position: -135
Score: 5.1
Sequence: GTATCTAAACGATTGAAAAC
Locus tag: RL4439
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: RL4438
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: RL4437
Name: RL4437
Funciton: hypothetical protein
Locus tag: RL4436
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: RL4435
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: RL4434
Name: AZC_4012
Funciton: hypothetical protein
Locus tag: RL4433
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
RL4439
mdh
Malate dehydrogenase (EC 1.1.1.37)
RL4438
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
RL4437
RL4437
hypothetical protein
RL4436
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
RL4435
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
RL4434
AZC_4012
hypothetical protein
RL4433
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -158
Score: 5.5
Sequence: CTATTCAAACGATTTAAAAT
Position: -128
Score: 5.4
Sequence: AATTTAAATCGATTAATTAT
Locus tag: RL0037
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
RL0037
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
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