Regulon of Irr in Rhizobium leguminosarum bv. viciae 3841
| Regulator type: | Transcription factor |
| TF locus tag: | RL0115, pRL110146 |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Heme |
| Regulog: | Irr - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 25 |
| - Operons | 9 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - Irr
- By taxonomy - Rhizobiales
- By TF family - FUR
- By effector - Heme
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -134
Score: 6.6 Sequence: AGTTTAGAACAATTCGAAACT
Locus tag: RL2583
Name: sufS2 Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: RL2582
Name: sufB Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RL2581
Name: null Funciton: hypothetical protein
Locus tag: RL2580
Name: sufC Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: RL2579
Name: sufD Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: RL2578
Name: sufS1 Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: RL2577
Name: PF01883 Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: RL2576
Name: sufA Funciton: Iron binding protein SufA for iron-sulfur cluster assembly |
|||
|
sufS2
|
Cysteine desulfurase (EC 2.8.1.7)
|
||
|
sufB
|
ABC transporter involved in Fe-S cluster assembly, permease protein
|
||
|
hypothetical protein
|
|||
|
sufC
|
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
|
||
|
sufD
|
ABC transporter involved in Fe-S cluster assembly, permease protein
|
||
|
sufS1
|
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
|
||
|
PF01883
|
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
|
||
|
sufA
|
Iron binding protein SufA for iron-sulfur cluster assembly
|
||
|
Position: -57
Score: 5.4 Sequence: TCTTTTGAAGCATTCTAAAGA
Locus tag: RL0400
Name: fssA Funciton: putative nifU-like iron-sulphur cluster scaffold protein |
|||
|
fssA
|
putative nifU-like iron-sulphur cluster scaffold protein
|
||
|
Position: -34
Score: 6.2 Sequence: GATTTAGAATTATTCTAAAAT
Locus tag: RL0263
Name: mbfA Funciton: membrane-bound ferritin |
|||
|
mbfA
|
membrane-bound ferritin
|
||
|
Position: -207
Score: 5.3 Sequence: TTCTTAAAATCATTCCAAACT
Locus tag: RL0322
Name: iprA Funciton: Iron-regulated protein A precursor |
|||
|
iprA
|
Iron-regulated protein A precursor
|
||
|
Position: -67
Score: 6.1 Sequence: ATTTTGGAATTGTTCAAAACT
Locus tag: RL0777
Name: rirA Funciton: Iron-responsive transcriptional regulator RirA, Rrf2 family |
|||
|
rirA
|
Iron-responsive transcriptional regulator RirA, Rrf2 family
|
||
|
Position: -118
Score: 5.4 Sequence: TATCTGGAATCATTCAAAACT
Locus tag: RL4379
Name: hemA Funciton: 5-aminolevulinate synthase (EC 2.3.1.37) |
|||
|
hemA
|
5-aminolevulinate synthase (EC 2.3.1.37)
|
||
|
Position: -92
Score: 4.9 Sequence: AGTTTGGAAACGCTCTAAAAC
Locus tag: RL2713
Name: irp6A Funciton: Iron ABC transporter periplasmic protein
Locus tag: RL2714
Name: irp6B Funciton: Iron ABC transporter permease component
Locus tag: RL2715
Name: irp6C Funciton: Iron ABC transporter, ATP-binding protein |
|||
|
irp6A
|
Iron ABC transporter periplasmic protein
|
||
|
irp6B
|
Iron ABC transporter permease component
|
||
|
irp6C
|
Iron ABC transporter, ATP-binding protein
|
||
|
Position: -54
Score: 4.9 Sequence: GATTTAGACCGGTTCCAATCT
Locus tag: RL2703
Name: fumA Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2) |
|||
|
fumA
|
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
|
||
|
Position: -107
Score: 5.5 Sequence: AGTCGAGAACAGTTCTAAACA
Locus tag: RL1432
Name: null Funciton: Hypothetical signal peptide protein
Locus tag: RL1433
Name: feuP Funciton: two component transcriptional regulator
Locus tag: RL1434
Name: feuQ Funciton: two-component sensor histidine kinase
Locus tag: RL1435
Name: lipA Funciton: outer membrane lipoprotein
Locus tag: RL1436
Name: cycH Funciton: Cytochrome c heme lyase subunit CcmH
Locus tag: RL1437
Name: cycJ Funciton: Cytochrome c-type biogenesis protein, heme chaperone
Locus tag: RL1438
Name: cycK Funciton: Cytochrome c heme lyase subunit cycK
Locus tag: RL1439
Name: cycL Funciton: Cytochrome c heme lyase subunit CcmL |
|||
|
Hypothetical signal peptide protein
|
|||
|
feuP
|
two component transcriptional regulator
|
||
|
feuQ
|
two-component sensor histidine kinase
|
||
|
lipA
|
outer membrane lipoprotein
|
||
|
cycH
|
Cytochrome c heme lyase subunit CcmH
|
||
|
cycJ
|
Cytochrome c-type biogenesis protein, heme chaperone
|
||
|
cycK
|
Cytochrome c heme lyase subunit cycK
|
||
|
cycL
|
Cytochrome c heme lyase subunit CcmL
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |