Regulon of LexA in Rhizobium leguminosarum bv. viciae 3841

Properties
Regulator type:	Transcription factor
TF locus tag:	RL2236
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Rhizobiales
Statistics of regulated genes:
- Genes	22
- Operons	18
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 212 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - LexA
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -35 Score: 1.2 Sequence: GAACATAACAGGAAC Locus tag: RL4699 Name: imuA Funciton: Predicted RecA/RadA recombinase Locus tag: RL4698 Name: imuB Funciton: DNA polymerase-like protein PA0670 Locus tag: RL4697 Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
	RL4699	imuA	Predicted RecA/RadA recombinase
	RL4698	imuB	DNA polymerase-like protein PA0670
	RL4697	dnaE2	DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -37 Score: 5.2 Sequence: GTTCTGGATTTGTTT Locus tag: RL2236 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	RL2236	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -139 Score: 5.6 Sequence: GTTCTTTATTTGTTC Locus tag: RL2398 Name: uvrA Funciton: Excinuclease ABC subunit A
	RL2398	uvrA	Excinuclease ABC subunit A
Position: -85 Score: 5.1 Sequence: GTTCTTGCATTGTTC Locus tag: RL0931 Name: PF04055 Funciton: Radical SAM domain protein
	RL0931	PF04055	Radical SAM domain protein
Position: -63 Score: 1.5 Sequence: GAACATTCAAGGAAC Locus tag: RL0607 Name: uvrD2 Funciton: ATP-dependent DNA helicase II
	RL0607	uvrD2	ATP-dependent DNA helicase II
Position: -58 Score: 0 Sequence: GAATGAAAGCAGAAC Locus tag: RL3276 Name: uvrD Funciton: ATP-dependent DNA helicase II
	RL3276	uvrD	ATP-dependent DNA helicase II
Position: -224 Score: 0.9 Sequence: GAACAAAAGCTGAAT Locus tag: RL4618 Name: mgpS Funciton: ATP-dependent helicase
	RL4618	mgpS	ATP-dependent helicase
Position: -241 Score: 0.2 Sequence: GAACAAATTGAAAAC Locus tag: RL1723 Name: dnaE Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
	RL1723	dnaE	DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -47 Score: 0.5 Sequence: GAACAAATAGGGAAC Locus tag: RL2115 Name: imuA Funciton: Predicted RecA/RadA recombinase Locus tag: RL2116 Name: imuB Funciton: DNA polymerase-like protein PA0670 Locus tag: RL2117 Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
	RL2115	imuA	Predicted RecA/RadA recombinase
	RL2116	imuB	DNA polymerase-like protein PA0670
	RL2117	dnaE2	DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -130 Score: -0.1 Sequence: AAACAAATGCAGAAC Position: -62 Score: 0.9 Sequence: GAACAAATAGGGTAC Locus tag: RL2637 Name: recA Funciton: Recombinase A
	RL2637	recA	Recombinase A
Position: -247 Score: 4.9 Sequence: GTTCACTATATGTTC Locus tag: RL3422 Name: greA Funciton: Transcription elongation factor GreA
	RL3422	greA	Transcription elongation factor GreA
Position: -60 Score: 4.5 Sequence: GTTTCCCTTTTGTAC Locus tag: RL2957 Name: uvrB Funciton: Excinuclease ABC subunit B
	RL2957	uvrB	Excinuclease ABC subunit B
Position: 10 Score: 5 Sequence: GTTCCTGTATTGTTC Locus tag: RL3334 Name: rna Funciton: Ribonuclease T2
	RL3334	rna	Ribonuclease T2
Position: -122 Score: 5 Sequence: GTTCAATCTTTGTTC Locus tag: RL1725 Name: dinP Funciton: DNA polymerase IV (EC 2.7.7.7)
	RL1725	dinP	DNA polymerase IV (EC 2.7.7.7)
Position: -58 Score: 5.4 Sequence: GTTTTTGTTTTGTTC Locus tag: RL3986 Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
	RL3986	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Position: -105 Score: 4.6 Sequence: GTTCCTTGATTGTTC Position: -94 Score: 5 Sequence: GTTCTTGTTTTATTC Locus tag: RL0339 Name: yifB Funciton: Conserved hypothetical protein
	RL0339	yifB	Conserved hypothetical protein
Position: -49 Score: 5 Sequence: GTTCACGTTTTGATC Locus tag: RL0428 Name: rmuC Funciton: DNA recombination protein RmuC
	RL0428	rmuC	DNA recombination protein RmuC
Position: -138 Score: 0.8 Sequence: GAACAAATAAAGAAC Locus tag: RL2399 Name: ssb Funciton: Single-stranded DNA-binding protein
	RL2399	ssb	Single-stranded DNA-binding protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LexA in Rhizobium leguminosarum bv. viciae 3841

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --