Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FnrN/FixK/AadR in Rhizobium leguminosarum bv. viciae 3841

Properties
Regulator type: Transcription factor
TF locus tag: RL1880, pRL90019, pRL90025, RL2818
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FnrN/FixK/AadR - Rhizobiales
Statistics of regulated genes:
- Genes 33
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -79
Score: 4.2
Sequence: GCTTTGCGATGAATCAATGC
Locus tag: pRL90027
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
pRL90027
adhA
Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Position: -87
Score: 4.7
Sequence: GCCTTGTCCCAGGTCAATCC
Position: -31
Score: 4.8
Sequence: GATTTGACGGTGATCAAAGA
Locus tag: RL1883
Name: hspC2
Funciton: Small heat shock protein
RL1883
hspC2
Small heat shock protein
Position: -218
Score: 5
Sequence: AGTTTGACCTGCCTCAAAGA
Position: -69
Score: 5.3
Sequence: CTCTTGATCTGCATCAAGGA
Locus tag: pRL100208
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: pRL100209
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: pRL100210
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: pRL100210A
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Locus tag: pRL100211
Name: null
Funciton: transcriptional regulator, Crp/Fnr family
pRL100208
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
pRL100209
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
pRL100210
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
pRL100210A
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
pRL100211
transcriptional regulator, Crp/Fnr family
Position: -96
Score: 5.2
Sequence: TCGTTGACGCAGATCAAGGC
Locus tag: pRL100205
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: pRL100206
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: pRL100206A
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: pRL100207
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
pRL100205
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
pRL100206
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
pRL100206A
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
pRL100207
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -241
Score: 4.8
Sequence: AGTTTGACCGGTGTCAAGGA
Position: -69
Score: 5.3
Sequence: TTCTTGATCTGCATCAAGGA
Locus tag: pRL90015
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: pRL90014
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: pRL90013
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: pRL90012A
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Locus tag: pRL90012
Name: null
Funciton: transcriptional regulator, Crp/Fnr family
pRL90015
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
pRL90014
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
pRL90013
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
pRL90012A
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
pRL90012
transcriptional regulator, Crp/Fnr family
Position: -96
Score: 5.2
Sequence: TTGTTGATGTAGATCAAGGA
Locus tag: pRL90018
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: pRL90017
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: pRL90016A
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: pRL90016
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
pRL90018
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
pRL90017
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
pRL90016A
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
pRL90016
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -70
Score: 5.3
Sequence: AACTTGATCAGGATCAATTA
Locus tag: pRL90008
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
pRL90008
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -65
Score: 5.2
Sequence: TGTTTGACCGGGATCAAGTC
Locus tag: RL1876
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
RL1876
adhA
Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Position: -75
Score: 5.2
Sequence: TGCTTGATGAAGATCAACGA
Locus tag: RL1878
Name: osmY
Funciton: Osmotically inducible protein Y precursor
RL1878
osmY
Osmotically inducible protein Y precursor
Position: -75
Score: 5.1
Sequence: GATTTGACCCAAGTCAAATT
Locus tag: pRL90275
Name: cydR
Funciton: Predicted transcriptional regulator, ArsR family
Locus tag: pRL90276
Name: cydD
Funciton: ATP-binding/permease protein CydD
Locus tag: pRL90277
Name: cydC
Funciton: ATP-binding/permease protein CydC
Locus tag: pRL90278
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: pRL90279
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
pRL90275
cydR
Predicted transcriptional regulator, ArsR family
pRL90276
cydD
ATP-binding/permease protein CydD
pRL90277
cydC
ATP-binding/permease protein CydC
pRL90278
cydA
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
pRL90279
cydB
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Position: -135
Score: 5.7
Sequence: GCTTTGATCTAGATCAAACA
Position: -103
Score: 4.2
Sequence: AAATTGATAATCCTCAAGCG
Locus tag: RL2818
Name: fnrN
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
RL2818
fnrN
Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
Position: -121
Score: 5.2
Sequence: TCCTTGATCTACATCAACAA
Locus tag: pRL90019
Name: fixKf
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family
Locus tag: pRL90020
Name: fixLf
Funciton: Two-component oxygen-sensor histidine kinase FixLf
pRL90019
fixKf
Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family
pRL90020
fixLf
Two-component oxygen-sensor histidine kinase FixLf
Position: -96
Score: 4.9
Sequence: CCGTTGACCAAAATCAATTC
Locus tag: RL3726
Name: sinR
Funciton: Biofilm formation transcriptional regulator SinR, Crp Family
RL3726
sinR
Biofilm formation transcriptional regulator SinR, Crp Family
Position: -60
Score: 5
Sequence: TCATTGATGCGCGTCAATGC
Locus tag: pRL90039
Name: COG2187
Funciton: Predicted kinase
pRL90039
COG2187
Predicted kinase
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise