# TF - NadQ: pRL110618 2208312 pRL110617 nadA 2208311 pRL110616 nadB 2208310 pRL110615 nadC # TF - NrdR 2204207 RL1945 nrdJ 2206496 RL4261 nrdH 2206495 RL4260 nrdI 2206494 RL4259 nrdE 2206493 RL4258 nrdF # TF - SahR: RL3332 2205571 RL3332 sahR 2205570 RL3331 metF 2202295 RL0031 ahcY 2202656 RL0389 metK 2205601 RL3362 metH # TF - Zur: RL3175 2206383 RL4148 yciC 2206384 RL4149 PF00400 2203318 RL1047 znuC 2203319 RL1048 znuB 2203320 RL1049 znuA 2205418 RL3178 znuA2 2205419 RL3179 yciC2 2205417 RL3177 znuC2 2205416 RL3176 znuB2 2205415 RL3175 zur # TF - HutC: pRL100361, pRL110210, pRL110208 2207297 pRL100361 hutC 2207296 pRL100360 COG834 (HisJ) 2207295 pRL100359 COG4160 (ArtM) 2207294 pRL100358 COG765 (HisM) 2207293 pRL100357 COG1126 (GlnQ) 2207901 pRL110207 hutF 2207902 pRL110208 hutC 2207900 pRL110206 hutI 2207899 pRL110205 hutH 2207898 pRL110204 hutG 2207897 pRL110203 hutU 2207896 pRL110202 hutD # TF - HypR: pRL100269 2207207 pRL100268 hypD 2207208 pRL100269 hypR # TF - RirA: RL0777 2201486 pRL120316 vbsA 2201487 pRL120317 vbsD 2201488 pRL120318 vsbL 2205934 RL3696 hmuP 2205935 RL3697 hmuS 2205936 RL3698 hmuT 2205937 RL3699 hmuU 2205938 RL3700 hmuV 2201490 pRL120320 vbsC 2207264 pRL100328 fhuC 2207263 pRL100327 fhuD 2207262 pRL100326 fhuB 2205405 RL3165 PF04773 2205406 RL3166 cyaK 2205932 RL3693 PF10087 2205931 RL3692 null 2205930 RL3691 PF03992 2204958 RL2713 irp6A 2204959 RL2714 irp6B 2204960 RL2715 irp6C 2201489 pRL120319 fecI 2205762 RL3522 shmR 2201492 pRL120322 fhuA2 2201491 pRL120321 fhuF 2204827 RL2583 sufS2 2204826 RL2582 sufB 2204825 RL2581 null 2204824 RL2580 sufC 2204823 RL2579 sufD 2204822 RL2578 sufS 2204821 RL2577 PF01883 2204820 RL2576 sufA 2205763 RL3523 PF06904 2206808 RL4584 fbpA 2206807 RL4583 fbpB 2206806 RL4582 fbpC 2203047 RL0777 rirA 2201876 pRL120713 eitA 2201875 pRL120712 eitB 2201874 pRL120711 eitC 2205933 RL3695 null 2204946 RL2701 fumC 2201485 pRL120315 vbsS 2201484 pRL120314 vbsO 2207261 pRL100325 fhuA3 # TF - Irr: RL0115, pRL110146 2204827 RL2583 sufS2 2204826 RL2582 sufB 2204825 RL2581 null 2204824 RL2580 sufC 2204823 RL2579 sufD 2204822 RL2578 sufS1 2204821 RL2577 PF01883 2204820 RL2576 sufA 2202667 RL0400 fssA 2202529 RL0263 mbfA 2202588 RL0322 iprA 2203047 RL0777 rirA 2206610 RL4379 hemA 2204958 RL2713 irp6A 2204959 RL2714 irp6B 2204960 RL2715 irp6C 2204948 RL2703 fumA 2203696 RL1432 null 2203697 RL1433 feuP 2203698 RL1434 feuQ 2203699 RL1435 lipA 2203700 RL1436 cycH 2203701 RL1437 cycJ 2203702 RL1438 cycK 2203703 RL1439 cycL # TF - NagQ: RL3361 2205599 RL3360 nagK 2205600 RL3361 nagQ # TF - NtrC: RL2257 2207280 pRL100344 nrtA 2207281 pRL100345 nrtB 2207282 pRL100346 nrtC 2204643 RL2393 glnB 2204642 RL2392 glnA 2204509 RL2255 nifR3 2204510 RL2256 ntrB 2204511 RL2257 ntrC 2202234 pRL90288 uctA 2202235 pRL90289 uctB 2202236 pRL90290 uctC 2202237 pRL90291 uahC 2202238 pRL90292 uahB 2202239 pRL90293 uahA 2202240 pRL90294 atzF 2206790 RL4565 glnK 2206789 RL4564 amtB # TF - Mur: RL0397 2206122 RL3884 sitA 2206123 RL3885 sitB 2206124 RL3886 sitC 2206125 RL3887 sitD 2203212 RL0940 mntH # TF - ModE: RL4688 2206907 RL4685 modA 2206908 RL4686 modB 2206909 RL4687 modC # TF - LexA: RL2236 2206921 RL4699 imuA 2206920 RL4698 imuB 2206919 RL4697 dnaE2 2204490 RL2236 lexA 2204648 RL2398 uvrA 2203203 RL0931 PF04055 2202876 RL0607 uvrD2 2205517 RL3276 uvrD 2206842 RL4618 mgpS 2203987 RL1723 dnaE 2204372 RL2115 imuA 2204373 RL2116 imuB 2204374 RL2117 dnaE2 2204881 RL2637 recA 2205662 RL3422 greA 2205202 RL2957 uvrB 2205573 RL3334 rna 2203989 RL1725 dinP 2206223 RL3986 ruvC 2202605 RL0339 yifB 2202695 RL0428 rmuC 2204649 RL2399 ssb # TF - LiuR: RL2550 2203578 RL1312 SMc00041 2202807 RL0537 PF03060 2203237 RL0965 acdH2 2203238 RL0966 echH 2202860 RL0591 acdH 2202861 RL0592 acdA 2202862 RL0593 null 2202863 RL0594 acdB 2206669 RL4439 mdh 2206668 RL4438 sucC 2206667 RL4437 null 2206666 RL4436 sucD 2206665 RL4435 sucA 2206664 RL4434 null 2206663 RL4433 sucB 2206552 RL4319 etfB 2206553 RL4320 etfA 2206554 RL4321 hbdA 2203743 RL1479 PF09917 2202774 RL0505 fadD 2203721 RL1457 etfD 2204794 RL2550 liuR1 # TF - XylR: RL3623 2205864 RL3623 xylR 2205865 RL3624 xylF 2205866 RL3625 xylH 2205867 RL3626 xylG # TF - RutR: RL3715 2202150 pRL90203 pytM 2202151 pRL90204 pytH 2202152 pRL90205 pytN 2202153 pRL90206 pytO 2202154 pRL90207 pytQ 2202155 pRL90208 codA 2205945 RL3707 pydX 2205946 RL3708 pydA 2202461 RL0196 pntD 2202462 RL0197 pntA 2202463 RL0198 pntB 2202464 RL0199 pntC 2202465 RL0200 cdd 2202466 RL0201 deoD 2202467 RL0202 deoC 2202468 RL0203 deoA 2205953 RL3715 rutR 2205954 RL3716 pydC 2205955 RL3717 RL3717 2205956 RL3718 pydB # TF - VanR: pRL90257 2202203 pRL90257 vanR 2202202 pRL90256 null 2202201 pRL90255 gcvT # TF - PhnF: RL0178 2202442 RL0177 phnG 2202441 RL0176 phnH 2202440 RL0175 phnI 2202439 RL0174 phnJ 2202438 RL0173 phnK 2202437 RL0172 phnL 2202436 RL0171 phnO 2202435 RL0170 phnC 2202443 RL0178 phnF # TF - YrdX: RL1422 2203687 RL1423 COG5349 2202931 RL0661 PF02635 2202930 RL0660 COG388 2202929 RL0659 COG2516 2202928 RL0658 COG3153 2202927 RL0657 COG2144 2202926 RL0656 COG438 (RfaG) 2202925 RL0655 AZC_0067 # TF - EutR: RL3349 2205588 RL3349 eutR 2205587 RL3348 eutA 2205586 RL3347 eutT 2205585 RL3346 eutB 2205584 RL3345 eutX 2205583 RL3344 eutY # RNA - Cobalamin 2206496 RL4261 nrdH 2206495 RL4260 nrdI 2206494 RL4259 nrdE 2206493 RL4258 nrdF 2205294 RL3052 btuF 2205293 RL3051 btuC 2205292 RL3050 btuD 2204926 RL2681 bluB # RNA - mini-ykkC 2202237 pRL90291 amt1 2202238 pRL90292 amt2 2202239 pRL90293 ucaA 2202240 pRL90294 ucaB 2204805 RL2561 ykkc # RNA - FMN 2203956 RL1692 ribN 2204970 RL2726 ribB 2205393 RL3153 ribH2 # RNA - TPP 2206630 RL4399 ykoF 2206631 RL4400 thiX 2206632 RL4401 thiZ 2206633 RL4402 thiY 2207087 pRL100148 thiC 2208137 pRL110443 thiM 2208136 pRL110442 thiE 2208135 pRL110441 thiD # RNA - serC 2206199 RL3961 serC 2206198 RL3960 serA # RNA - speF 2206391 RL4156 speF # RNA - Glycine 2204816 RL2572 gcvT # RNA - SAM_alpha 2202824 RL0554 metY 2206830 RL4606 metA # RNA - ykkC-yxkD 2202234 pRL90288 uctB 2202235 pRL90289 uctP 2202236 pRL90290 uctA 2202237 pRL90291 amt3 2202238 pRL90292 amt4 2202239 pRL90293 ucaA 2202240 pRL90294 ucaB # RNA - ybhL 2206757 RL4532 ybhL # TF - RhaR: pRL110414 2208109 pRL110415 rhaEW 2208110 pRL110416 rhaI 2208108 pRL110414 rhaR 2208107 pRL110413 rhaF 2208106 pRL110412 rhaG 2208105 pRL110411 rhaH 2208104 pRL110410 rhaJ 2208103 pRL110409 rhaM 2208102 pRL110408 rhaK # TF - NifA: pRL100196 2207100 pRL100162 nifH 2207099 pRL100161 nifD 2207098 pRL100160 nifK 2207097 pRL100159 nifE 2207096 pRL100158 nifN 2207138 pRL100200 fixB 2207137 pRL100199 fixA 2207136 pRL100198 fixC 2207135 pRL100197 fixX 2207134 pRL100196 nifA 2207133 pRL100195 nifB # TF - AglR: RL0744 2203015 RL0745 aglE 2203016 RL0746 aglF 2203017 RL0747 aglG 2203018 RL0748 aglA 2203019 RL0749 aglK 2203014 RL0744 aglR 2205925 RL3686 thuA 2205924 RL3685 null # TF - RL3595: RL3595 2205835 RL3594 PF00701 2205834 RL3593 PF00083 2205836 RL3595 RL3595 # TF - PckR: RL4145 2206298 RL4061 COG5480 2206297 RL4060 pykA 2206299 RL4062 COG3931 2206300 RL4063 COG3492 2206380 RL4145 pckR 2206379 RL4144 hpr 2206676 RL4446 sdhC 2206675 RL4445 sdhD 2206674 RL4444 sdhA 2206673 RL4443 sdhB 2202448 RL0183 mgsA 2202447 RL0182 glk 2206397 RL4162 eda 2206249 RL4012 fba 2203023 RL0753 zwf 2203022 RL0752 pgl 2203021 RL0751 edd 2206669 RL4439 mdh 2206668 RL4438 sucC 2206667 RL4437 RL4437 2206666 RL4436 sucD 2206665 RL4435 sucA 2206664 RL4434 AZC_4012 2206663 RL4433 sucB 2202301 RL0037 pckA # TF - HrcA: RL0381 2203156 RL0884 groS 2203155 RL0883 groL 2201809 pRL120643 groS 2201808 pRL120642 groL 2203676 RL1410 groS 2203677 RL1412 groL # TF - SocR: pRL120732 2201895 pRL120732 socR 2201896 pRL120733 socA 2201897 pRL120734 socB 2201898 pRL120735 socD # TF - RbsR2: pRL90226 2202173 pRL90226 rbsR2 2202172 pRL90225 rbsA 2202171 pRL90224 rbsB 2202170 pRL90223 rbsC 2202169 pRL90222 COG1735 2202168 pRL90221 COG5426 2202167 pRL90220 SSF51366 2202166 pRL90219 tenA 2202165 pRL90218 rbsK # TF - RhiR: pRL120694 2201849 pRL120685 rhiL 2201850 pRL120686 rhiX 2201851 pRL120687 rhiN 2201852 pRL120688 pgl 2201853 pRL120689 rhiK 2201854 pRL120690 rhiG 2201855 pRL120691 rhiF # TF - PsiR 2201363 pRL120191 psiA 2201364 pRL120192 psiB 2201365 pRL120193 psiC 2201366 pRL120194 psiD 2201367 pRL120195 psiE 2201362 pRL120189 psiR # TF - SMb20537: RL0083 2202346 RL0082 SMb20538 2202347 RL0083 SMb20537 2202348 RL0084 COG4289 2202349 RL0085 COG0111 # TF - SMb20667: pRL120618 2201783 pRL120617 COG2271 2201782 pRL120616 ygbJ 2201781 pRL120615 ygbM 2201780 pRL120614 ygbK 2201784 pRL120618 SMb20667 2201785 pRL120619 ygbL # TF - MocR: pRL110623 2208317 pRL110622 mocD 2208316 pRL110621 mocE 2208315 pRL110620 mocF 2208318 pRL110623 mocR # TF - SoxR: RL4397 2206628 RL4397 soxR 2206629 RL4398 PF03358 2206400 RL4165 PF00903 2205652 RL3412 PF03992 # TF - CueR: pRL110009, pRL110330 2208024 pRL110331 copA 2208023 pRL110330 cueR 2207703 pRL110010 copA 2207702 pRL110009 cueR # TF - CadR-PbrR: RL4263 2206497 RL4262 cadA # TF - AduR: RL3877 2206115 RL3877 aduR 2206116 RL3878 aduA 2206117 RL3879 aduB 2206118 RL3880 aduC 2206119 RL3881 aduD 2206120 RL3882 aduH 2206121 RL3883 ade # TF - SMb21598: pRL90240 2202186 pRL90240 SMb21598 2202185 pRL90239 COG0673 2202184 pRL90238 COG1082 2202183 pRL90237 SMb21595 2202182 pRL90235 SMb21594 2202181 pRL90234 SMb21593 2202180 pRL90233 SMb21592 # TF - SMb21706: RL4378, pRL100262 2207202 pRL100263 SMb20634 2207203 pRL100264 SMb20633 2207204 pRL100265 SMb20632 2207205 pRL100266 PF07944 2207206 pRL100267 SMb20630 2206609 RL4378 SMb21706 2206608 RL4377 SMb20634 2206607 RL4376 SMb20633 2206606 RL4375 SMb20632 2206605 RL4374 PF07944 2206604 RL4373 SMb20630 2207201 pRL100262 SMb21706 # TF - SMc04260: RL2797 2205041 RL2796 SMc04259 2205040 RL2795 SMc04258 2205039 RL2794 SMc04257 2205038 RL2793 SMc04256 2205037 RL2792 null 2205036 RL2791 COG1082 2205035 RL2790 COG0673 2206403 RL4168 bglSch 2205042 RL2797 SMc04260 # TF - RL4253 : RL4253 2206487 RL4252 RL4252 2206486 RL4251 RL4251 2206485 RL4250 RL4250 2206484 RL4249 RL4249 2206488 RL4253 RL4253 # TF - SMb20717: RL4175 2206410 RL4175 SMb20717 2206409 RL4174 SMb20718 2206408 RL4173 SMb20719 2206407 RL4172 SMb20720 # TF - EutR: pRL120046 2201224 pRL120046 EutR 2201223 pRL120045 doeX 2201222 pRL120044 doeC 2201221 pRL120043 doeD 2201220 pRL120042 COG604 (Qor) 2201225 pRL120047 ehuA 2201226 pRL120048 ehuB 2201227 pRL120049 ehuC 2201228 pRL120050 ehuD 2201229 pRL120051 eutA 2201230 pRL120052 eutB 2201231 pRL120053 eutC 2201232 pRL120054 eutD 2201233 pRL120055 eutE # TF - AfrR: RL1820 2204084 RL1820 afrR 2204085 RL1821 ydiF 2204086 RL1822 crt 2204087 RL1823 aldh 2204088 RL1824 null 2204089 RL1825 null 2204090 RL1826 null 2204091 RL1827 null 2204092 RL1828 null 2204093 RL1829 null 2204094 RL1830 null 2204095 RL1831 null # TF - IdnR: pRL100388 2207323 pRL100387 gnl 2207326 pRL100390 COG1063 2207325 pRL100389 idnD 2207330 pRL100394 null 2207331 pRL100395 null 2207332 pRL100396 null 2207327 pRL100391 idnO 2207328 pRL100392 idnK 2207329 pRL100393 gnd 2207324 pRL100388 idnR # TF - XylR: RL4178 2203783 RL1519 COG5001 2205033 RL2788 xynA 2203447 RL1181 COG3576 2206413 RL4178 xylR 2206412 RL4177 xylB 2206411 RL4176 xylA # TF - Mll1683: RL1995 2204257 RL1996 mll1682 2204258 RL1997 mll1680 2204259 RL1998 mll1679 2204260 RL1999 mll1678 2204256 RL1995 mll1683 # TF - pRL90265: pRL90265 2202216 pRL90270 pRL90270 2202215 pRL90269 pRL90269 2202214 pRL90268 pRL90268 2202213 pRL90267 pRL90267 2202212 pRL90266 COG0584 2202211 pRL90265 pRL90265 2202210 pRL90264 PF00459 # TF - SMb20039: RL3118 2205357 RL3117 COG697 # TF - Mll0059: RL2610 2204854 RL2610 Mll0059 2206250 RL4013 phzF # TF - UxuR2: pRL120399 2201566 pRL120399 uxuR2 2201567 pRL120400 dctP # TF - MdcY: RL0989 2203261 RL0989 mdcY 2203262 RL0990 matA 2203263 RL0991 matB 2203264 RL0992 matC # TF - FnrN/FixK/AadR: RL1880, pRL90019, pRL90025, RL2818 2201984 pRL90027 adhA 2204146 RL1883 hspC2 2207146 pRL100208 ccoG 2207147 pRL100209 ccoH 2207148 pRL100210 ccoI 2207149 pRL100210A ccoS 2207150 pRL100211 null 2207142 pRL100205 ccoN 2207143 pRL100206 ccoO 2207144 pRL100206A ccoQ 2207145 pRL100207 ccoP 2201971 pRL90015 ccoG 2201970 pRL90014 ccoH 2201969 pRL90013 ccoI 2201968 pRL90012A ccoS 2201967 pRL90012 null 2201975 pRL90018 ccoN 2201974 pRL90017 ccoO 2201973 pRL90016A ccoQ 2201972 pRL90016 ccoP 2201964 pRL90008 hemA 2204139 RL1876 adhA 2204141 RL1878 osmY 2202221 pRL90275 cydR 2202222 pRL90276 cydD 2202223 pRL90277 cydC 2202224 pRL90278 cydA 2202225 pRL90279 cydB 2205063 RL2818 fnrN 2201976 pRL90019 fixKf 2201977 pRL90020 fixLf 2205964 RL3726 sinR 2201994 pRL90039 COG2187 # TF - FixJ: RL1881, pRL90026 2201975 pRL90018 ccoN 2201974 pRL90017 ccoO 2201973 pRL90016A ccoQ 2201972 pRL90016 ccoP 2204143 RL1880 fixKf 2204142 RL1879 fixLf 2204144 RL1881 fixJf 2201982 pRL90025 fixKf 2201983 pRL90026 fixJf 2201976 pRL90019 fixKf 2201977 pRL90020 fixLf # TF - FixJ 2207134 pRL100196 nifA