Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Rhizobium leguminosarum bv. viciae 3841

Properties
Regulator type: Transcription factor
TF locus tag: RL2550
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhizobiales
Statistics of regulated genes:
- Genes 22
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 84 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -40
Score: 4.9
Sequence: ATTAACGTTGACGTTAAC
Position: -34
Score: 5.7
Sequence: GTTGACGTTAACGTCAAA
Locus tag: RL1312
Name: SMc00041
Funciton: hypothetical protein
RL1312
SMc00041
hypothetical protein
Position: -37
Score: 5.8
Sequence: ATTGACGTTTTCGTAAAC
Locus tag: RL0537
Name: PF03060
Funciton: Dioxygenases related to 2-nitropropane dioxygenase
RL0537
PF03060
Dioxygenases related to 2-nitropropane dioxygenase
Position: -82
Score: 6.4
Sequence: ATTGACGTTTACGTAAAA
Locus tag: RL0965
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: RL0966
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
RL0965
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
RL0966
echH
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -87
Score: 6.3
Sequence: TTTGACGTTTACGCAAAC
Locus tag: RL0591
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: RL0592
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: RL0593
Name: null
Funciton: Mannose-6-phosphate isomerase
Locus tag: RL0594
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
RL0591
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
RL0592
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
RL0593
Mannose-6-phosphate isomerase
RL0594
acdB
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -159
Score: 5.8
Sequence: TATTACGTTTACGTAAGA
Locus tag: RL4439
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: RL4438
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: RL4437
Name: null
Funciton: hypothetical protein
Locus tag: RL4436
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: RL4435
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: RL4434
Name: null
Funciton: hypothetical protein
Locus tag: RL4433
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
RL4439
mdh
Malate dehydrogenase (EC 1.1.1.37)
RL4438
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
RL4437
hypothetical protein
RL4436
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
RL4435
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
RL4434
hypothetical protein
RL4433
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -180
Score: 5.7
Sequence: ATTGACGTGAACGTAAAC
Locus tag: RL4319
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: RL4320
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: RL4321
Name: hbdA
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
RL4319
etfB
Electron transfer flavoprotein, beta subunit
RL4320
etfA
Electron transfer flavoprotein, alpha subunit
RL4321
hbdA
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Position: -61
Score: 4.9
Sequence: ATTTACCTTTACGTTCGC
Locus tag: RL1479
Name: PF09917
Funciton: Protein of unknown function, PF09917
RL1479
PF09917
Protein of unknown function, PF09917
Position: -159
Score: 5.9
Sequence: GTTGACGTTTACGTTAAG
Locus tag: RL0505
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
RL0505
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -164
Score: 5.6
Sequence: ATTGACGTTGACGTAAGC
Locus tag: RL1457
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
RL1457
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -53
Score: 5.2
Sequence: ATTGACTATTACGTAAAA
Locus tag: RL2550
Name: liuR1
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
RL2550
liuR1
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise