Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Shewanella sp MR-4

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AgaR N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate N-acetylgalactosamine utilization 2 2
TF AraR Arabinose Arabinose utilization 5 6
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 26 39
TF AzrR Paraquat Superoxide stress response 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 207 216
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 8 7
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 6 7
TF Fnr Oxygen Anaerobic metabolism 42 35
TF Fur Iron ion, (Fe2+) Iron homeostasis 35 35
TF GcvA Glycine Glycine metabolism 8 8
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 19 17
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 4
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 2 1
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 5 6
TF LexA DNA damage SOS response 11 11
TF LiuR Branched-chain amino acid degradation 9 9
TF LldR L-lactate Lactate utilization 1 1
TF MalR Maltose Maltodextrin utilization 4 6
TF MetJ S-adenosylmethionine Methionine biosynthesis; Methionine metabolism 13 24
TF MetR Homocysteine Methionine biosynthesis 7 9
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 2 2
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 9 9
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 24 21
TF NhaR Potassium ion Osmotic stress response 3 3
TF NmlR Diamide Carbonyl stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 2 7
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 4 5
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 4 7
TF PUR Purine metabolism 5 4
TF PdhR Pyruvate Pyruvate metabolism 10 7
TF PhrR Blue light; Adenosylcobalamin Light-dependent DNA repair 2 3
TF PhsR Thiosulfate Thiosulfate reduction 1 1
TF PrpR 2-methylcitrate Methylcitrate utilization 1 3
TF PsrA Oleate Fatty acid degradation 17 18
TF SO0072 Hypothetical ABC transporter 2 2
TF SO0193 Fatty acid metabolism 1 1
TF SO1393 2 4
TF SO1415 3 3
TF SO1578 Glutathione metabolism 2 2
TF SO1703 Multidrug resistance 1 1
TF SO1758 1 1
TF SO2282 Metabolite transport 3 5
TF SO3277 Multidrug resistance 2 4
TF SO3393 Drug resistance 2 6
TF SO3494 Multidrug resistance 2 4
TF SO4468 2 2
TF SO4705 2 2
TF ScrR Sucrose Sucrose utilization 3 3
TF SdaR Glycerate Glycerate utilization 1 1
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TsrR Thiosulfate Thiosulfate reduction 2 2
TF TtrR Tetrathionate Tetrathionate reduction 2 2
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 22 21
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 2 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 3 3
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA yybP-ykoY 1 1
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