Regulon of AgaR in Shewanella sp MR-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shewmr4_2536 |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate |
| Regulog: | AgaR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - AgaR
- By TF family - DeoR
- By effector - N-acetylgalactosamine-6-phosphate
- By effector - Galactosamine-6-phosphate
- By pathway - N-acetylgalactosamine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -157
Score: 6.1 Sequence: GAAACTTTTTGAAAG
Locus tag: Shewmr4_2537
Name: omp_aga Funciton: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane |
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omp_aga
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TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
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Position: -71
Score: 6 Sequence: GAAAGTGTTTGAAAG
Locus tag: Shewmr4_2536
Name: agaR Funciton: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
Locus tag: Shewmr4_2535
Name: agaO Funciton: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
Locus tag: Shewmr4_2534
Name: agaZ Funciton: Tagatose-6-phosphate kinase (EC 2.7.1.144)
Locus tag: Shewmr4_2533
Name: agaS Funciton: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
Locus tag: Shewmr4_2532
Name: agaK Funciton: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
Locus tag: Shewmr4_2531
Name: agaA-II Funciton: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
Locus tag: Shewmr4_2530
Name: agaP Funciton: Predicted N-acetylgalactosamine permease, GGP family |
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agaR
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Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
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agaO
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Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
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agaZ
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Tagatose-6-phosphate kinase (EC 2.7.1.144)
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agaS
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Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
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agaK
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N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
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agaA-II
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N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
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agaP
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Predicted N-acetylgalactosamine permease, GGP family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |