Regulog AgaR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - AgaR
- By TF family - DeoR
- By effector - N-acetylgalactosamine-6-phosphate
- By effector - Galactosamine-6-phosphate
- By pathway - N-acetylgalactosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | ||
| Shewanella sp W3-18-1 | ||
| Shewanella sp ANA-3 | 8 | 2 |
| Shewanella sp MR-4 | 8 | 2 |
| Shewanella sp MR-7 | 8 | 2 |
| Shewanella baltica OS155 | ||
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | 8 | 2 |
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 |
| Genes | Function | ||||||||||||||||
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| CRON 1. | |||||||||||||||||
| omp_aga |
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Shewanella sp ANA-3 Site: position = -157 score = 6.09341 sequence = GAAACTTTTTGAAAG Gene: Shewana3_2703: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane |
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Shewanella sp MR-4 Site: position = -157 score = 6.09341 sequence = GAAACTTTTTGAAAG Gene: Shewmr4_2537: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane |
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Shewanella sp MR-7 Site: position = -157 score = 6.09341 sequence = GAAACTTTTTGAAAG Gene: Shewmr7_2604: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane |
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Shewanella amazonensis SB2B Site: position = -151 score = 4.61995 sequence = GAAAGAAAATAAAAG Gene: Sama_1192: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane |
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TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane |
| CRON 2. | |||||||||||||||||
| agaR |
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Shewanella sp ANA-3 Site: position = -71 score = 5.68709 sequence = GAAAGTGTTTGAAGG Gene: Shewana3_2702: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Shewanella sp MR-4 Site: position = -71 score = 6.03883 sequence = GAAAGTGTTTGAAAG Gene: Shewmr4_2536: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Shewanella sp MR-7 Site: position = -71 score = 6.03883 sequence = GAAAGTGTTTGAAAG Gene: Shewmr7_2603: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Shewanella amazonensis SB2B Site: position = -67 score = 5.56488 sequence = GAAACCTATTGAAAG Gene: Sama_1193: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
| agaO |
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Gene: Shewana3_2701: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family |
Gene: Shewmr4_2535: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family |
Gene: Shewmr7_2602: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family |
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Gene: Sama_1194: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family |
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Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family |
| agaZ |
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Gene: Shewana3_2700: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
Gene: Shewmr4_2534: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
Gene: Shewmr7_2601: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
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Gene: Sama_1195: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
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Tagatose-6-phosphate kinase (EC 2.7.1.144) |
| agaS |
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Gene: Shewana3_2699: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
Gene: Shewmr4_2533: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
Gene: Shewmr7_2600: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: Sama_1196: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
| agaK |
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Gene: Shewana3_2698: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157) |
Gene: Shewmr4_2532: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157) |
Gene: Shewmr7_2599: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157) |
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Gene: Sama_1197: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157) |
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N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157) |
| agaA-II |
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Gene: Shewana3_2697: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25) |
Gene: Shewmr4_2531: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25) |
Gene: Shewmr7_2598: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25) |
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Gene: Sama_1198: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25) |
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N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25) |
| agaP |
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Gene: Shewana3_2696: Predicted N-acetylgalactosamine permease, GGP family |
Gene: Shewmr4_2530: Predicted N-acetylgalactosamine permease, GGP family |
Gene: Shewmr7_2597: Predicted N-acetylgalactosamine permease, GGP family |
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Gene: Sama_1199: Predicted N-acetylgalactosamine permease, GGP family |
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Predicted N-acetylgalactosamine permease, GGP family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |