Regulog AgaR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	N-acetylgalactosamine utilization
Effector:	N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - AgaR
By TF family - DeoR
By effector - N-acetylgalactosamine-6-phosphate
By effector - Galactosamine-6-phosphate
By pathway - N-acetylgalactosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3	8	2
Shewanella sp MR-4	8	2
Shewanella sp MR-7	8	2
Shewanella baltica OS155
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B	8	2
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
omp_aga	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -157 score = 6.09341 sequence = GAAACTTTTTGAAAG Gene: Shewana3_2703: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane	* Shewanella sp MR-4 Site: position = -157 score = 6.09341 sequence = GAAACTTTTTGAAAG Gene: Shewmr4_2537: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane	* Shewanella sp MR-7 Site: position = -157 score = 6.09341 sequence = GAAACTTTTTGAAAG Gene: Shewmr7_2604: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -151 score = 4.61995 sequence = GAAAGAAAATAAAAG Gene: Sama_1192: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane

CRON 2.
agaR	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -71 score = 5.68709 sequence = GAAAGTGTTTGAAGG Gene: Shewana3_2702: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	* Shewanella sp MR-4 Site: position = -71 score = 6.03883 sequence = GAAAGTGTTTGAAAG Gene: Shewmr4_2536: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	* Shewanella sp MR-7 Site: position = -71 score = 6.03883 sequence = GAAAGTGTTTGAAAG Gene: Shewmr7_2603: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -67 score = 5.56488 sequence = GAAACCTATTGAAAG Gene: Sama_1193: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaO	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2701: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family	Shewanella sp MR-4 Gene: Shewmr4_2535: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family	Shewanella sp MR-7 Gene: Shewmr7_2602: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1194: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
agaZ	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2700: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Shewanella sp MR-4 Gene: Shewmr4_2534: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Shewanella sp MR-7 Gene: Shewmr7_2601: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1195: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Tagatose-6-phosphate kinase (EC 2.7.1.144)
agaS	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2699: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Shewanella sp MR-4 Gene: Shewmr4_2533: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Shewanella sp MR-7 Gene: Shewmr7_2600: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1196: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaK	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2698: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	Shewanella sp MR-4 Gene: Shewmr4_2532: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	Shewanella sp MR-7 Gene: Shewmr7_2599: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1197: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
agaA-II	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2697: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)	Shewanella sp MR-4 Gene: Shewmr4_2531: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)	Shewanella sp MR-7 Gene: Shewmr7_2598: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1198: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
agaP	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_2696: Predicted N-acetylgalactosamine permease, GGP family	Shewanella sp MR-4 Gene: Shewmr4_2530: Predicted N-acetylgalactosamine permease, GGP family	Shewanella sp MR-7 Gene: Shewmr7_2597: Predicted N-acetylgalactosamine permease, GGP family	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1199: Predicted N-acetylgalactosamine permease, GGP family	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Predicted N-acetylgalactosamine permease, GGP family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AgaR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --