Regulon of AgaR in Shewanella amazonensis SB2B

Properties
Regulator type:	Transcription factor
TF locus tag:	Sama_1193
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	N-acetylgalactosamine utilization
Effector:	N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Regulog:	AgaR - Shewanellaceae
Statistics of regulated genes:
- Genes	8
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - AgaR
By TF family - DeoR
By effector - N-acetylgalactosamine-6-phosphate
By effector - Galactosamine-6-phosphate
By pathway - N-acetylgalactosamine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -151 Score: 4.6 Sequence: GAAAGAAAATAAAAG Locus tag: Sama_1192 Name: omp_aga Funciton: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
	Sama_1192	omp_aga	TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
Position: -67 Score: 5.6 Sequence: GAAACCTATTGAAAG Locus tag: Sama_1193 Name: agaR Funciton: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family Locus tag: Sama_1194 Name: agaO Funciton: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family Locus tag: Sama_1195 Name: agaZ Funciton: Tagatose-6-phosphate kinase (EC 2.7.1.144) Locus tag: Sama_1196 Name: agaS Funciton: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) Locus tag: Sama_1197 Name: agaK Funciton: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157) Locus tag: Sama_1198 Name: agaA-II Funciton: N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25) Locus tag: Sama_1199 Name: agaP Funciton: Predicted N-acetylgalactosamine permease, GGP family
	Sama_1193	agaR	Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
	Sama_1194	agaO	Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family
	Sama_1195	agaZ	Tagatose-6-phosphate kinase (EC 2.7.1.144)
	Sama_1196	agaS	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
	Sama_1197	agaK	N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
	Sama_1198	agaA-II	N-acetylgalactosamine-6-phosphate deacetylase, alternative (EC 3.5.1.25)
	Sama_1199	agaP	Predicted N-acetylgalactosamine permease, GGP family

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD