Regulon of TPP in Shewanella sp MR-4

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Shewanellaceae
Under regulation:
- Genes	10
- Operons	2

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -165 Score: 67.3 Sequence: TAGCGCCGCCAAGGG... Locus tag: Shewmr4_2310 Name: omp_thi Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent Locus tag: Shewmr4_2309 Name: ykoF Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative Locus tag: Shewmr4_2308 Name: pnuT Funciton: Predicted thiamin transporter PnuT Locus tag: Shewmr4_2307 Name: thiK Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family
	Shewmr4_2310	omp_thi	predicted thiamin-specific outer membrane transporter, TonB-dependent
	Shewmr4_2309	ykoF	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
	Shewmr4_2308	pnuT	Predicted thiamin transporter PnuT
	Shewmr4_2307	thiK	predicted thiamine kinase, aminoglycoside phosphotransferase family
Position: -256 Score: 72.6 Sequence: CCATCTTGTCGGAGT... Locus tag: Shewmr4_1881 Name: thiC Funciton: Phosphomethylpyrimidine synthase Locus tag: Shewmr4_1882 Name: thiDE Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: Shewmr4_1883 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF Locus tag: Shewmr4_1884 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: Shewmr4_1885 Name: thiG Funciton: Thiazole synthase Locus tag: Shewmr4_1886 Name: thiH Funciton: 2-iminoacetate synthase (EC 1.3.99.n2)
	Shewmr4_1881	thiC	Phosphomethylpyrimidine synthase
	Shewmr4_1882	thiDE	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Shewmr4_1883	thiF	Sulfur carrier protein adenylyltransferase ThiF
	Shewmr4_1884	thiS	Sulfur carrier protein ThiS
	Shewmr4_1885	thiG	Thiazole synthase
	Shewmr4_1886	thiH	2-iminoacetate synthase (EC 1.3.99.n2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD