Regulon of TPP in Shewanella sp MR-4
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Regulog: | TPP - Shewanellaceae |
| Under regulation: | |
| - Genes | 10 |
| - Operons | 2 |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -165
Score: 67.3 Sequence: TAGCGCCGCCAAGGG...
Locus tag: Shewmr4_2310
Name: omp_thi Funciton: predicted thiamin-specific outer membrane transporter, TonB-dependent
Locus tag: Shewmr4_2309
Name: ykoF Funciton: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
Locus tag: Shewmr4_2308
Name: pnuT Funciton: Predicted thiamin transporter PnuT
Locus tag: Shewmr4_2307
Name: thiK Funciton: predicted thiamine kinase, aminoglycoside phosphotransferase family |
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omp_thi
|
predicted thiamin-specific outer membrane transporter, TonB-dependent
|
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ykoF
|
Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
|
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pnuT
|
Predicted thiamin transporter PnuT
|
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thiK
|
predicted thiamine kinase, aminoglycoside phosphotransferase family
|
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Position: -256
Score: 72.6 Sequence: CCATCTTGTCGGAGT...
Locus tag: Shewmr4_1881
Name: thiC Funciton: Phosphomethylpyrimidine synthase
Locus tag: Shewmr4_1882
Name: thiDE Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Locus tag: Shewmr4_1883
Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF
Locus tag: Shewmr4_1884
Name: thiS Funciton: Sulfur carrier protein ThiS
Locus tag: Shewmr4_1885
Name: thiG Funciton: Thiazole synthase
Locus tag: Shewmr4_1886
Name: thiH Funciton: 2-iminoacetate synthase (EC 1.3.99.n2) |
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thiC
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Phosphomethylpyrimidine synthase
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thiDE
|
Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
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thiF
|
Sulfur carrier protein adenylyltransferase ThiF
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thiS
|
Sulfur carrier protein ThiS
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thiG
|
Thiazole synthase
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thiH
|
2-iminoacetate synthase (EC 1.3.99.n2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |