Regulon of MetJ in Shewanella sp MR-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewmr4_3440
Regulator family:	MetJ
Regulation mode:	repressor
Biological process:	Methionine biosynthesis; Methionine metabolism
Effector:	S-adenosylmethionine
Regulog:	MetJ - Shewanellaceae
Statistics of regulated genes:
- Genes	14
- Operons	12
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 397 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - MetJ
By TF family - MetJ
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis
By pathway - Methionine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -101 Score: 6.4 Sequence: GGACATAT-(0)-AGACGTCC Position: -93 Score: 6.8 Sequence: AGACGTCC-(0)-AAACGTCC Locus tag: Shewmr4_3437 Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
	Shewmr4_3437	metF	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Position: -48 Score: 6.2 Sequence: AGGCGTAT-(0)-AGACATCC Position: -40 Score: 6.7 Sequence: AGACATCC-(0)-AGAAGTCT Locus tag: Shewmr4_2599 Name: COG3126 Funciton: Lipoprotein-related protein Locus tag: Shewmr4_2598 Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
	Shewmr4_2599	COG3126	Lipoprotein-related protein
	Shewmr4_2598	metA	Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -94 Score: 7.3 Sequence: AGACGTCT-(0)-AAACGTCT Position: -39 Score: 7.2 Sequence: AGACGTCC-(0)-AGACATCT Locus tag: Shewmr4_3439 Name: metB Funciton: Cystathionine gamma-synthase (EC 2.5.1.48) Locus tag: Shewmr4_3438 Name: metL Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
	Shewmr4_3439	metB	Cystathionine gamma-synthase (EC 2.5.1.48)
	Shewmr4_3438	metL	Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Position: -126 Score: 6.6 Sequence: AAACTTCT-(0)-AGACGTCC Position: -118 Score: 6.5 Sequence: AGACGTCC-(0)-AGACGCCC Locus tag: Shewmr4_3299 Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
	Shewmr4_3299	metE	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: -59 Score: 5.8 Sequence: AGCCGTCT-(0)-AGATGTAG Locus tag: Shewmr4_0772 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	Shewmr4_0772	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -160 Score: 6.2 Sequence: AAACATTT-(0)-AGACTTCT Position: -152 Score: 6.6 Sequence: AGACTTCT-(0)-AGATGTCC Locus tag: Shewmr4_0928 Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
	Shewmr4_0928	metY	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Position: -97 Score: 6.3 Sequence: GGGCGTCT-(0)-GGACGTCT Position: -89 Score: 6.4 Sequence: GGACGTCT-(0)-AGAAGTTT Locus tag: Shewmr4_3300 Name: metR Funciton: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
	Shewmr4_3300	metR	Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Position: -118 Score: 6.3 Sequence: GGACGTCT-(0)-ATACGTAT Position: -110 Score: 5.7 Sequence: ATACGTAT-(0)-AAATGTCC Locus tag: Shewmr4_0838 Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
	Shewmr4_0838	metH	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Position: -181 Score: 7 Sequence: AGATGTCT-(0)-GGACGTCT Position: -173 Score: 6 Sequence: GGACGTCT-(0)-AAATGTAC Position: -134 Score: 5.6 Sequence: AGGCGTTA-(0)-AGACGTTT Position: -126 Score: 7.3 Sequence: AGACGTTT-(0)-AGACGTCT Position: -118 Score: 6.1 Sequence: AGACGTCT-(0)-AAACATAA Locus tag: Shewmr4_3440 Name: metJ Funciton: S-adenosylmethionine-responsive transcriptional repressor MetJ
	Shewmr4_3440	metJ	S-adenosylmethionine-responsive transcriptional repressor MetJ
Position: -29 Score: 6.5 Sequence: AGCCATCT-(0)-AGACTTCT Locus tag: Shewmr4_2030 Name: msrA Funciton: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
	Shewmr4_2030	msrA	Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
Position: -152 Score: 7.1 Sequence: AAACATCT-(0)-AGACGTCT Position: -144 Score: 5.6 Sequence: AGACGTCT-(0)-AGATTGAC Locus tag: Shewmr4_0919 Name: metT Funciton: Methionine transporter MetT, NhaC antiporter family
	Shewmr4_0919	metT	Methionine transporter MetT, NhaC antiporter family
Position: -431 Score: 6.2 Sequence: ATCCGTAT-(0)-AGACGTCT Locus tag: Shewmr4_3302 Name: btuB Funciton: TonB-dependent outer membrane transporter for vitamin B12
	Shewmr4_3302	btuB	TonB-dependent outer membrane transporter for vitamin B12

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of MetJ in Shewanella sp MR-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --