Regulon of ArgR in Shewanella sp MR-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewmr4_3340
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	38
- Operons	21
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -98 Score: 4.8 Sequence: GTTGAATGAAAATGCATC Locus tag: Shewmr4_1058 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Shewmr4_1058	argW	Predicted arginine uptake transporter, COG3314 family
Position: -327 Score: 4.4 Sequence: ACTGAGTTATTAAGCAGT Position: -249 Score: 4 Sequence: TAAAAATATATATTCACA Locus tag: Shewmr4_3709 Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
	Shewmr4_3709	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Position: -190 Score: 4.9 Sequence: TATGAGTATTTATTCATT Position: -123 Score: 3.8 Sequence: ATTTAATTTACAAACACT Locus tag: Shewmr4_1390 Name: aprE Funciton: Alkaline serine protease
	Shewmr4_1390	aprE	Alkaline serine protease
Position: -227 Score: 4 Sequence: AGTCACTTTTTAATCAAA Position: -142 Score: 3.6 Sequence: AAGAAATAGTTATGCATT Locus tag: Shewmr4_1584 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	Shewmr4_1584	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -248 Score: 3.8 Sequence: CCAGAATTTTAATTTATT Position: -194 Score: 4 Sequence: TTCGATTAAAAATGCACC Locus tag: Shewmr4_3363 Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1)
	Shewmr4_3363	SO0762	Isochorismate hydrolase (EC 3.3.2.1)
Position: -307 Score: 4.1 Sequence: ATTGTGTAGTTATTCATA Position: -247 Score: 4 Sequence: TCTGACTAAATATGCTAA Locus tag: Shewmr4_0611 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Shewmr4_0612 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Shewmr4_0613 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Shewmr4_0614 Name: SO0620 Funciton: Conserved hypothetical protein
	Shewmr4_0611	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Shewmr4_0612	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Shewmr4_0613	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Shewmr4_0614	SO0620	Conserved hypothetical protein
Position: -60 Score: 4.9 Sequence: AATGCATAAAGATTCACT Locus tag: Shewmr4_3708 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Shewmr4_3707 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Shewmr4_3706 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Shewmr4_3705 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Shewmr4_3708	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Shewmr4_3707	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Shewmr4_3706	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Shewmr4_3705	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -84 Score: 4.5 Sequence: TTTGAACAAACATTCAAA Position: -60 Score: 3.9 Sequence: CTTGAATGATCGTTCAAA Locus tag: Shewmr4_1158 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	Shewmr4_1158	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -141 Score: 4.3 Sequence: TTTGAAAATATAAGCACT Position: -79 Score: 5.4 Sequence: GGTGAATTAAAATGCAAT Locus tag: Shewmr4_3594 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Shewmr4_3594	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -71 Score: 5.1 Sequence: ACTGTATATAAATTCAGT Position: -49 Score: 3.7 Sequence: ACTGTTTATCAATACAGT Locus tag: Shewmr4_1104 Name: recN Funciton: DNA repair protein RecN
	Shewmr4_1104	recN	DNA repair protein RecN
Position: -254 Score: 4.4 Sequence: AATGAATAAAAAATGATA Position: -97 Score: 5 Sequence: TATGAATTTTTAATCATT Position: -76 Score: 4 Sequence: AAAGCATAATTATTGACA Locus tag: Shewmr4_3053 Name: artI Funciton: Arginine ABC transporter, substrate-binding protein Locus tag: Shewmr4_3054 Name: artQ Funciton: Arginine ABC transporter, permease protein Locus tag: Shewmr4_3055 Name: artM Funciton: Arginine ABC transporter, ATP-binding protein
	Shewmr4_3053	artI	Arginine ABC transporter, substrate-binding protein
	Shewmr4_3054	artQ	Arginine ABC transporter, permease protein
	Shewmr4_3055	artM	Arginine ABC transporter, ATP-binding protein
Position: -25 Score: 4.7 Sequence: AATGAAAATAAATTCAGG Locus tag: Shewmr4_2297 Name: ggt2 Funciton: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
	Shewmr4_2297	ggt2	Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Position: -742 Score: 5.3 Sequence: TCTGCATTTTTATTCAAA Locus tag: Shewmr4_3667 Name: speF Funciton: Ornithine decarboxylase (EC 4.1.1.17) Locus tag: Shewmr4_3668 Name: potE Funciton: Putrescine/proton symporter, putrescine/ornithine antiporter PotE Locus tag: Shewmr4_3669 Name: SO0312 Funciton: Predicted outer membrane porin
	Shewmr4_3667	speF	Ornithine decarboxylase (EC 4.1.1.17)
	Shewmr4_3668	potE	Putrescine/proton symporter, putrescine/ornithine antiporter PotE
	Shewmr4_3669	SO0312	Predicted outer membrane porin
Position: -106 Score: 4.2 Sequence: TTTAAATTCACATTCAGT Locus tag: Shewmr4_3913 Name: SO4732 Funciton: Conserved hypothetical protein
	Shewmr4_3913	SO4732	Conserved hypothetical protein
Position: -189 Score: 4.5 Sequence: ACTGCTTAGTTATTCATT Position: -153 Score: 3.6 Sequence: TGTTATTTTGCATTCATT Locus tag: Shewmr4_0828 Name: pbpG Funciton: D-alanyl-D-alanine endopeptidase
	Shewmr4_0828	pbpG	D-alanyl-D-alanine endopeptidase
Position: -457 Score: 3.5 Sequence: AATCACAAGTTATTCATT Position: -373 Score: 3.6 Sequence: CGTGCATAATTAATCGAC Position: -105 Score: 3.6 Sequence: ACTGAATGAAAGTGAATC Locus tag: Shewmr4_1903 Name: omp(Arg) Funciton: TonB-dependent receptor
	Shewmr4_1903	omp(Arg)	TonB-dependent receptor
Position: -359 Score: 4.5 Sequence: AAAGAATAACAATTCACT Position: -313 Score: 4.3 Sequence: TTTGCAATAAAAATCACT Locus tag: Shewmr4_2872 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Shewmr4_2873 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Shewmr4_2872	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Shewmr4_2873	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -445 Score: 4.1 Sequence: AATGCATTTGCAATCAAC Position: -182 Score: 4.2 Sequence: AGTCAAAATTAATGCATA Position: -172 Score: 5 Sequence: AATGCATAAAAATACACT Locus tag: Shewmr4_2373 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Shewmr4_2373	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -93 Score: 5.5 Sequence: ATTGCATTTTTATTCAGT Locus tag: Shewmr4_3340 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Shewmr4_3340	argR	Arginine metabolism transcriptional regulator ArgR
Position: -427 Score: 4.4 Sequence: AGTGCTTTTAAATTGAAA Position: -375 Score: 4.2 Sequence: TGTGAAATCTCATTCAAT Position: -164 Score: 4.2 Sequence: TGTGCTTGTTAATGCAAG Locus tag: Shewmr4_2918 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: Shewmr4_2917 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: Shewmr4_2916 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: Shewmr4_2915 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	Shewmr4_2918	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	Shewmr4_2917	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	Shewmr4_2916	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	Shewmr4_2915	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -201 Score: 4.5 Sequence: AGTGATTATTAAATCACA Locus tag: Shewmr4_0362 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: Shewmr4_0363 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: Shewmr4_0364 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: Shewmr4_0365 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	Shewmr4_0362	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	Shewmr4_0363	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	Shewmr4_0364	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	Shewmr4_0365	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella sp MR-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --