Regulon of FadR in Shewanella sp MR-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shewmr4_1568 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor (activator) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Regulog: | FadR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 6 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - FadR
- By TF family - GntR/Others
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -92
Score: 5.3 Sequence: AACTGGCCAGACCTGTT
Locus tag: Shewmr4_3871
Name: SO4716 Funciton: Acetyltransferase, GNAT family |
|||
|
SO4716
|
Acetyltransferase, GNAT family
|
||
|
Position: -113
Score: 5.2 Sequence: TAATGGTCAGACCTGTT
Locus tag: Shewmr4_1407
Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex
Locus tag: Shewmr4_1408
Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex |
|||
|
fadI
|
FadI component of anaerobic fatty acid oxidation complex
|
||
|
fadJ
|
FadJ component of anaerobic fatty acid oxidation complex
|
||
|
Position: -196
Score: 4.8 Sequence: ATCTGGCCAGACCATTC
Position: -125
Score: 5.1 Sequence: ATCTGGTCGGACTTGTT
Locus tag: Shewmr4_1397
Name: fadL Funciton: Long-chain fatty acid transport protein |
|||
|
fadL
|
Long-chain fatty acid transport protein
|
||
|
Position: -29
Score: 4.9 Sequence: TTCTGGCCTGACCAGTA
Locus tag: Shewmr4_0573
Name: SO0572 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
|||
|
SO0572
|
Enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
Position: -53
Score: 3.4 Sequence: CTCTGGTATGATCAGTG
Locus tag: Shewmr4_1568
Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family |
|||
|
fadR
|
Transcriptional regulator for fatty acid degradation FadR, GntR family
|
||
|
Position: -94
Score: 4.2 Sequence: CACAGGTCAGACCACAA
Locus tag: Shewmr4_2146
Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|||
|
fadE
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |