Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Pseudomonas fluorescens Pf-5

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BirA Biotin Biotin biosynthesis 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 1
TF CueR Copper ion, (Cu+) Copper resistance 3 2
TF DesT Unsaturated acyl-CoA; Unsaturated acyl-ACP Fatty acid biosynthesis 2 2
TF EutR Ethanolamine Ethanolamine utilization 1 2
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 2
TF GcvR Glycine Glycine metabolism 1 3
TF GlcC Glycolate Glycolate utilization 2 4
TF GntR Gluconate Gluconate utilization 3 5
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 4 6
TF HexR1 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 4 3
TF HmgR Homogentisate Tyrosine degradation 2 3
TF HutC cis-Urocanic acid Histidine utilization 4 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF LexA DNA damage SOS response 17 13
TF LexA2 DNA damage SOS response 1 1
TF LiuR Branched-chain amino acid degradation 3 5
TF LldR L-lactate Lactate utilization 2 2
TF MetR Homocysteine Methionine biosynthesis 6 6
TF ModE Molybdate Molybdenum homeostasis 2 1
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 1 2
TF NorR Nitric oxide Nitrosative stress response 3 9
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 3 3
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 3 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 7 7
TF PA1520 Xanthine utilization; Allantoin utilization 10 13
TF PA2100 Multidrug efflux 1 1
TF PFL_0254 Sugar utilization 2 2
TF PFL_2191 1 1
TF PP0486 Metabolite transport 3 3
TF PSPTO5027 1 1
TF PdxQ3 Metabolite transport; Pyridoxine/pyridoxal homeostasis 2 2
TF PdxR Pyridoxine/pyridoxal homeostasis 2 2
TF PdxW2 Pyridoxal-5-phosphate Pyridoxine biosynthesis 1 1
TF PhhR Tyrosine; Phenylalanine Aromatic amino acid metabolism 2 4
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 4 4
TF PhrR Blue light; Adenosylcobalamin Light-dependent DNA repair 6 7
TF PrpR 2-methylcitrate Methylcitrate utilization 3 3
TF PsrA Oleate Fatty acid degradation 10 10
TF PtxS 2-keto-D-gluconate 2-ketogluconate utilization 3 2
TF RbsR Ribose Ribose utilization 1 1
TF RutR Uracil Pyrimidine utilization 7 4
TF RutR2 Uracil Pyrimidine utilization 3 2
TF RutR3 Uracil Pyrimidine utilization 3 3
TF SahR S-adenosylhomocysteine Methionine metabolism 1 1
TF ScrR Sucrose Sucrose utilization 2 2
TF SdaR Glucarate utilization; Galactarate utilization 2 2
TF SdaR D-glycerate Glycerate utilization 3 4
TF SoxR Paraquat Superoxide stress response 4 2
TF TreR Trehalose-6-phosphate Trehalose utilization 2 4
TF UreR 1 3
TF VanR Vanillate Vanillate utilization 2 4
TF YdcR 4 4
TF YjiR 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 11 10
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 9 5
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 1
RNA S15 Ribosome biogenesis 1 1
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA yybP-ykoY 2 2
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