Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Pseudomonas fluorescens Pf-5

Properties
Regulator type: Transcription factor
TF locus tag: PFL_0730
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Pseudomonadaceae
Statistics of regulated genes:
- Genes 13
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 29 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -253
Score: 5.4
Sequence: ACCTGACCCAAGAGCCAACT
Locus tag: PFL_4372
Name: tsx
Funciton: Nucleoside-binding outer membrane protein
tsx
Nucleoside-binding outer membrane protein

Position: -189
Score: 5.7
Sequence: AGCTGACCATCCAGGCAAGT
Locus tag: PFL_4366
Name: COG0726
Funciton: putative polysaccharide deacetylase family protein
Locus tag: PFL_4367
Name: pucL
Funciton: Uricase (EC 1.7.3.3)
Locus tag: PFL_4368
Name: allC
Funciton: Allantoicase (EC 3.5.3.4)
Locus tag: PFL_4369
Name: allA
Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19)
Locus tag: PFL_4370
Name: COG3748
Funciton: hypothetical protein, COG3748
Locus tag: PFL_4371
Name: pbuT2
Funciton: Xanthine/uracil permease
COG0726
putative polysaccharide deacetylase family protein
pucL
Uricase (EC 1.7.3.3)
allC
Allantoicase (EC 3.5.3.4)
allA
Ureidoglycolate hydrolase (EC 3.5.3.19)
COG3748
hypothetical protein, COG3748
pbuT2
Xanthine/uracil permease

Position: -22
Score: 5.4
Sequence: TCCTGACCCACTGGCCAGGA
Locus tag: PFL_0728
Name: ppuA
Funciton: Predicted ABC transporter, ATP-binding protein
Locus tag: PFL_0727
Name: ppuC
Funciton: Predicted ABC transporter, permease protein
Locus tag: PFL_0726
Name: ppuD
Funciton: Predicted ABC transporter, inner membrane protein precursor
ppuA
Predicted ABC transporter, ATP-binding protein
ppuC
Predicted ABC transporter, permease protein
ppuD
Predicted ABC transporter, inner membrane protein precursor

Position: -22
Score: 5.3
Sequence: ACCTGAGCACCTGGACAGCT
Locus tag: PFL_0731
Name: pbuT
Funciton: Xanthine/uracil permease
Locus tag: PFL_0730
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Locus tag: PFL_0729
Name: COG1739
Funciton: hypothetical protein, COG1739
pbuT
Xanthine/uracil permease
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
COG1739
hypothetical protein, COG1739
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD