Regulon of RutR in Pseudomonas fluorescens Pf-5
| Regulator type: | Transcription factor |
| TF locus tag: | PFL_0730 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Pseudomonadaceae
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -253
Score: 5.4 Sequence: ACCTGACCCAAGAGCCAACT
Locus tag: PFL_4372
Name: tsx Funciton: Nucleoside-binding outer membrane protein |
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tsx
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Nucleoside-binding outer membrane protein
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Position: -189
Score: 5.7 Sequence: AGCTGACCATCCAGGCAAGT
Locus tag: PFL_4366
Name: COG0726 Funciton: putative polysaccharide deacetylase family protein
Locus tag: PFL_4367
Name: pucL Funciton: Uricase (EC 1.7.3.3)
Locus tag: PFL_4368
Name: allC Funciton: Allantoicase (EC 3.5.3.4)
Locus tag: PFL_4369
Name: allA Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19)
Locus tag: PFL_4370
Name: COG3748 Funciton: hypothetical protein, COG3748
Locus tag: PFL_4371
Name: pbuT2 Funciton: Xanthine/uracil permease |
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COG0726
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putative polysaccharide deacetylase family protein
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pucL
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Uricase (EC 1.7.3.3)
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allC
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Allantoicase (EC 3.5.3.4)
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allA
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Ureidoglycolate hydrolase (EC 3.5.3.19)
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COG3748
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hypothetical protein, COG3748
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pbuT2
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Xanthine/uracil permease
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Position: -22
Score: 5.4 Sequence: TCCTGACCCACTGGCCAGGA
Locus tag: PFL_0728
Name: ppuA Funciton: Predicted ABC transporter, ATP-binding protein
Locus tag: PFL_0727
Name: ppuC Funciton: Predicted ABC transporter, permease protein
Locus tag: PFL_0726
Name: ppuD Funciton: Predicted ABC transporter, inner membrane protein precursor |
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ppuA
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Predicted ABC transporter, ATP-binding protein
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ppuC
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Predicted ABC transporter, permease protein
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ppuD
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Predicted ABC transporter, inner membrane protein precursor
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Position: -22
Score: 5.3 Sequence: ACCTGAGCACCTGGACAGCT
Locus tag: PFL_0731
Name: pbuT Funciton: Xanthine/uracil permease
Locus tag: PFL_0730
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Locus tag: PFL_0729
Name: COG1739 Funciton: hypothetical protein, COG1739 |
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pbuT
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Xanthine/uracil permease
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rutR
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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COG1739
|
hypothetical protein, COG1739
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |