Regulon of RutR in Pseudomonas fluorescens Pf-5

Properties
Regulator type:	Transcription factor
TF locus tag:	PFL_0730
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Regulog:	RutR - Pseudomonadaceae
Statistics of regulated genes:
- Genes	13
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 29 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Pseudomonadaceae
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -253 Score: 5.4 Sequence: ACCTGACCCAAGAGCCAACT Locus tag: PFL_4372 Name: tsx Funciton: Nucleoside-binding outer membrane protein
	PFL_4372	tsx	Nucleoside-binding outer membrane protein
Position: -189 Score: 5.7 Sequence: AGCTGACCATCCAGGCAAGT Locus tag: PFL_4366 Name: COG0726 Funciton: putative polysaccharide deacetylase family protein Locus tag: PFL_4367 Name: pucL Funciton: Uricase (EC 1.7.3.3) Locus tag: PFL_4368 Name: allC Funciton: Allantoicase (EC 3.5.3.4) Locus tag: PFL_4369 Name: allA Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19) Locus tag: PFL_4370 Name: COG3748 Funciton: hypothetical protein, COG3748 Locus tag: PFL_4371 Name: pbuT2 Funciton: Xanthine/uracil permease
	PFL_4366	COG0726	putative polysaccharide deacetylase family protein
	PFL_4367	pucL	Uricase (EC 1.7.3.3)
	PFL_4368	allC	Allantoicase (EC 3.5.3.4)
	PFL_4369	allA	Ureidoglycolate hydrolase (EC 3.5.3.19)
	PFL_4370	COG3748	hypothetical protein, COG3748
	PFL_4371	pbuT2	Xanthine/uracil permease
Position: -22 Score: 5.4 Sequence: TCCTGACCCACTGGCCAGGA Locus tag: PFL_0728 Name: ppuA Funciton: Predicted ABC transporter, ATP-binding protein Locus tag: PFL_0727 Name: ppuC Funciton: Predicted ABC transporter, permease protein Locus tag: PFL_0726 Name: ppuD Funciton: Predicted ABC transporter, inner membrane protein precursor
	PFL_0728	ppuA	Predicted ABC transporter, ATP-binding protein
	PFL_0727	ppuC	Predicted ABC transporter, permease protein
	PFL_0726	ppuD	Predicted ABC transporter, inner membrane protein precursor
Position: -22 Score: 5.3 Sequence: ACCTGAGCACCTGGACAGCT Locus tag: PFL_0731 Name: pbuT Funciton: Xanthine/uracil permease Locus tag: PFL_0730 Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family Locus tag: PFL_0729 Name: COG1739 Funciton: hypothetical protein, COG1739
	PFL_0731	pbuT	Xanthine/uracil permease
	PFL_0730	rutR	Transcriptional regulator RutR of pyrimidine catabolism, TetR family
	PFL_0729	COG1739	hypothetical protein, COG1739

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD