Regulon of Cobalamin in Pseudomonas fluorescens Pf-5
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Pseudomonadaceae |
| Under regulation: | |
| - Genes | 22 |
| - Operons | 5 |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -154
Score: 123 Sequence: CATATGCGCGCCAGT...
Locus tag: PFL_2970
Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB |
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btuB
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Outer membrane vitamin B12 receptor BtuB
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Position: -98
Score: 94.9 Sequence: CGTAGCCTTGCGCTT...
Locus tag: PFL_3655
Name: null Funciton: CobW GTPase involved in cobalt insertion for B12 biosynthesis
Locus tag: PFL_3654
Name: null Funciton: CobN component of cobalt chelatase involved in B12 biosynthesis
Locus tag: PFL_3653
Name: chII Funciton: ChlI component of cobalt chelatase involved in B12 biosynthesis
Locus tag: PFL_3652
Name: chlD Funciton: ChlD component of cobalt chelatase involved in B12 biosynthesis |
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CobW GTPase involved in cobalt insertion for B12 biosynthesis
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CobN component of cobalt chelatase involved in B12 biosynthesis
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chII
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ChlI component of cobalt chelatase involved in B12 biosynthesis
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chlD
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ChlD component of cobalt chelatase involved in B12 biosynthesis
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Position: -189
Score: 126.2 Sequence: CATATGCCGCCCAGT...
Locus tag: PFL_2240
Name: btuB2 Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: PFL_2239
Name: cbiW Funciton: Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis
Locus tag: PFL_2238
Name: btuF2 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF |
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btuB2
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Outer membrane vitamin B12 receptor BtuB
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cbiW
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Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis
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btuF2
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Vitamin B12 ABC transporter, B12-binding component BtuF
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Position: -315
Score: 105.6 Sequence: ACCTTCGCGACTTGT...
Locus tag: PFL_4431
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Locus tag: PFL_4430
Name: cbiA Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: PFL_4429
Name: bluB Funciton: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
Locus tag: PFL_4428
Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: PFL_4427
Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: PFL_4426
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: PFL_4425
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: PFL_4424
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: PFL_4423
Name: cobC Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Locus tag: PFL_4422
Name: cobS Funciton: Cobalamin synthase |
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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cbiA
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Cobyrinic acid A,C-diamide synthase
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bluB
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Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
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cbiB
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Adenosylcobinamide-phosphate synthase
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cobD
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L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
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cbiP
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Cobyric acid synthase
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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cobT
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Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cobC
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Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
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cobS
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Cobalamin synthase
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Position: -156
Score: 105.3 Sequence: CTACACACCTTGTTA...
Locus tag: PFL_3656
Name: cbtB Funciton: hypothetical protein
Locus tag: PFL_3657
Name: cbtA Funciton: Predicted cobalt transporter CbtA
Locus tag: PFL_3658
Name: cobE Funciton: Cobalamin biosynthesis protein CobE
Locus tag: PFL_3659
Name: cbiF Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
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cbtB
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hypothetical protein
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cbtA
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Predicted cobalt transporter CbtA
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cobE
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Cobalamin biosynthesis protein CobE
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cbiF
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Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |