Regulon of Cobalamin in Pseudomonas fluorescens Pf-5

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Regulog:	Cobalamin - Pseudomonadaceae
Under regulation:
- Genes	22
- Operons	5

Member of regulog collections

By taxonomy - Pseudomonadaceae
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -154 Score: 123 Sequence: CATATGCGCGCCAGT... Locus tag: PFL_2970 Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB
	PFL_2970	btuB	Outer membrane vitamin B12 receptor BtuB
Position: -98 Score: 94.9 Sequence: CGTAGCCTTGCGCTT... Locus tag: PFL_3655 Name: null Funciton: CobW GTPase involved in cobalt insertion for B12 biosynthesis Locus tag: PFL_3654 Name: null Funciton: CobN component of cobalt chelatase involved in B12 biosynthesis Locus tag: PFL_3653 Name: chII Funciton: ChlI component of cobalt chelatase involved in B12 biosynthesis Locus tag: PFL_3652 Name: chlD Funciton: ChlD component of cobalt chelatase involved in B12 biosynthesis
	PFL_3655		CobW GTPase involved in cobalt insertion for B12 biosynthesis
	PFL_3654		CobN component of cobalt chelatase involved in B12 biosynthesis
	PFL_3653	chII	ChlI component of cobalt chelatase involved in B12 biosynthesis
	PFL_3652	chlD	ChlD component of cobalt chelatase involved in B12 biosynthesis
Position: -189 Score: 126.2 Sequence: CATATGCCGCCCAGT... Locus tag: PFL_2240 Name: btuB2 Funciton: Outer membrane vitamin B12 receptor BtuB Locus tag: PFL_2239 Name: cbiW Funciton: Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis Locus tag: PFL_2238 Name: btuF2 Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
	PFL_2240	btuB2	Outer membrane vitamin B12 receptor BtuB
	PFL_2239	cbiW	Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis
	PFL_2238	btuF2	Vitamin B12 ABC transporter, B12-binding component BtuF
Position: -315 Score: 105.6 Sequence: ACCTTCGCGACTTGT... Locus tag: PFL_4431 Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Locus tag: PFL_4430 Name: cbiA Funciton: Cobyrinic acid A,C-diamide synthase Locus tag: PFL_4429 Name: bluB Funciton: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family Locus tag: PFL_4428 Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase Locus tag: PFL_4427 Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Locus tag: PFL_4426 Name: cbiP Funciton: Cobyric acid synthase Locus tag: PFL_4425 Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Locus tag: PFL_4424 Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Locus tag: PFL_4423 Name: cobC Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) Locus tag: PFL_4422 Name: cobS Funciton: Cobalamin synthase
	PFL_4431	btuR	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
	PFL_4430	cbiA	Cobyrinic acid A,C-diamide synthase
	PFL_4429	bluB	Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
	PFL_4428	cbiB	Adenosylcobinamide-phosphate synthase
	PFL_4427	cobD	L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
	PFL_4426	cbiP	Cobyric acid synthase
	PFL_4425	cobU	Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
	PFL_4424	cobT	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
	PFL_4423	cobC	Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
	PFL_4422	cobS	Cobalamin synthase
Position: -156 Score: 105.3 Sequence: CTACACACCTTGTTA... Locus tag: PFL_3656 Name: cbtB Funciton: hypothetical protein Locus tag: PFL_3657 Name: cbtA Funciton: Predicted cobalt transporter CbtA Locus tag: PFL_3658 Name: cobE Funciton: Cobalamin biosynthesis protein CobE Locus tag: PFL_3659 Name: cbiF Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
	PFL_3656	cbtB	hypothetical protein
	PFL_3657	cbtA	Predicted cobalt transporter CbtA
	PFL_3658	cobE	Cobalamin biosynthesis protein CobE
	PFL_3659	cbiF	Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Cobalamin in Pseudomonas fluorescens Pf-5

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --