Regulon of YdcR in Pseudomonas fluorescens Pf-5
| Regulator type: | Transcription factor |
| TF locus tag: | PFL_2868 |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Regulog: | YdcR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 4 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/MocR
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -203
Score: 7.8 Sequence: AGCTGATCCGCTTTT-(9)-TTCTGATCTTTTTTT
Locus tag: PFL_0053
Name: gadh3 Funciton: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit
Locus tag: PFL_0054
Name: gadh1 Funciton: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein
Locus tag: PFL_0055
Name: gadh2 Funciton: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
|||
|
gadh3
|
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit
|
||
|
gadh1
|
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein
|
||
|
gadh2
|
Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c
|
||
|
Position: -120
Score: 8.1 Sequence: ATCTGATCCGTATTA-(9)-TTCTGAGCCTGTTTT
Locus tag: PFL_2834
Name: ccoN Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) |
|||
|
ccoN
|
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
|
||
|
Position: -97
Score: 9.4 Sequence: ATCTGATCCGGTTTT-(9)-ACCTGAGTCTGTTAT
Locus tag: PFL_2869
Name: COG0348 Funciton: Polyferredoxin
Locus tag: PFL_2868
Name: ydcR Funciton: Transcriptional regulator, GntR family |
|||
|
COG0348
|
Polyferredoxin
|
||
|
ydcR
|
Transcriptional regulator, GntR family
|
||
|
Position: -118
Score: 7.1 Sequence: GGCTGATATGGTTTT-(9)-ACCTGAATCTGTAAC
Locus tag: PFL_2835
Name: cysI Funciton: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)
Locus tag: PFL_2836
Name: COG3749 Funciton: Oxidoreductase probably involved in sulfite reduction |
|||
|
cysI
|
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)
|
||
|
COG3749
|
Oxidoreductase probably involved in sulfite reduction
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |