Regulog YdcR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | ||
| Pseudomonas aeruginosa PAO1 | 3 | 2 |
| Pseudomonas entomophila L48 | 2 | 1 |
| Pseudomonas fluorescens Pf-5 | 8 | 4 |
| Pseudomonas mendocina ymp | 2 | 1 |
| Pseudomonas putida KT2440 | 2 | 1 |
| Pseudomonas stutzeri A1501 | 2 | 1 |
| Pseudomonas syringae pv. tomato str. DC3000 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ccoN |
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*
Pseudomonas aeruginosa PAO1 Site: position = -137 score = 7.23758 sequence = ATCTGATACCCAAAT-(9)-ACCTGAAGCTGTTTT Gene: PA4133: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) |
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*
Pseudomonas fluorescens Pf-5 Site: position = -120 score = 8.07576 sequence = ATCTGATCCGTATTA-(9)-TTCTGAGCCTGTTTT Gene: PFL_2834: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) |
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Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) |
| CRON 2. | |||||||||
| cysI |
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*
Pseudomonas aeruginosa PAO1 Site: position = -183 score = 7.892 sequence = ATCTGATGTGTTTTT-(9)-ATCTGCCGCTGTTTC Gene: PA4130: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
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*
Pseudomonas fluorescens Pf-5 Site: position = -118 score = 7.1348 sequence = GGCTGATATGGTTTT-(9)-ACCTGAATCTGTAAC Gene: PFL_2835: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
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Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
| COG3749 |
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Gene: PA4129: Oxidoreductase probably involved in sulfite reduction |
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Gene: PFL_2836: Oxidoreductase probably involved in sulfite reduction |
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Oxidoreductase probably involved in sulfite reduction |
| CRON 3. | |||||||||
| COG0348 |
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Gene: PA4131: Polyferredoxin |
*
Pseudomonas entomophila L48 Site: position = -98 score = 8.54989 sequence = ATCTGATATGGTTTT-(9)-ACCTGAGTCTGTGCT Gene: PSEEN2987: Polyferredoxin |
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Pseudomonas fluorescens Pf-5 Site: position = -97 score = 9.43236 sequence = ATCTGATCCGGTTTT-(9)-ACCTGAGTCTGTTAT Gene: PFL_2869: Polyferredoxin |
*
Pseudomonas mendocina ymp Site: position = -99 score = 9.00965 sequence = ATCTGATCCGCTTTT-(9)-ACCTGAGTCTGTTTT Gene: Pmen_3094: Polyferredoxin |
*
Pseudomonas putida KT2440 Site: position = -98 score = 8.7785 sequence = ATCTGATATGGTTTT-(9)-ATCTGAACCTGTGCT Gene: PP3543: Polyferredoxin |
*
Pseudomonas stutzeri A1501 Site: position = -97 score = 8.76249 sequence = ATCTGATCCGTATTT-(9)-ATCTGAGTCTGTTAT Gene: PST_2730: Polyferredoxin |
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Polyferredoxin |
| ydcR |
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Gene: PA4132: Transcriptional regulator, GntR family |
Gene: PSEEN2988: Transcriptional regulator, GntR family |
Gene: PFL_2868: Transcriptional regulator, GntR family |
Gene: Pmen_3095: Transcriptional regulator, GntR family |
Gene: PP3544: Transcriptional regulator, GntR family |
Gene: PST_2731: Transcriptional regulator, GntR family |
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Transcriptional regulator, GntR family |
| CRON 4. | |||||||||
| gadh3 |
Gene: Avin_00890: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
Gene: PA2264: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -203 score = 7.80628 sequence = AGCTGATCCGCTTTT-(9)-TTCTGATCTTTTTTT Gene: PFL_0053: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
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Gene: PP3384: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
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Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
| gadh1 |
Gene: Avin_00900: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
Gene: PA2265: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
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Gene: PFL_0054: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
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Gene: PP3383: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
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Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
| gadh2 |
Gene: Avin_00910: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
Gene: PA2266: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
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Gene: PFL_0055: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
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Gene: PP3382: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
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Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |