Regulon of VanR in Pseudomonas fluorescens Pf-5
| Regulator type: | Transcription factor |
| TF locus tag: | PFL_3473 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate |
| Regulog: | VanR - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 3 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - VanR
- By TF family - GntR/Others
- By effector - Vanillate
- By pathway - Vanillate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -203
Score: 4.8 Sequence: TGTGGATCCATT
Locus tag: PFL_3480
Name: vanK Funciton: 4-hydroxybenzoate/vanillate transporter |
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vanK
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4-hydroxybenzoate/vanillate transporter
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Position: -150
Score: 5 Sequence: AATGGATCCATA
Position: -128
Score: 4.7 Sequence: ACTGGATCCAAA
Position: -44
Score: 5.3 Sequence: AATGGATCCATT
Locus tag: PFL_3471
Name: vanA Funciton: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
Locus tag: PFL_3472
Name: vanB Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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vanA
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Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
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vanB
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |