Regulog VanR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - VanR
- By TF family - GntR/Others
- By effector - Vanillate
- By pathway - Vanillate utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 3 | 2 |
| Pseudomonas entomophila L48 | ||
| Pseudomonas putida KT2440 | 3 | 2 |
| Pseudomonas syringae pv. tomato str. DC3000 | 2 | 1 |
| Pseudomonas fluorescens Pf-5 | 3 | 2 |
| Pseudomonas mendocina ymp | ||
| Pseudomonas stutzeri A1501 | ||
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| vanA |
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Pseudomonas aeruginosa PAO1 Site: position = -13 score = 3.45211 sequence = AGAGGATCCGAC Site: position = -222 score = 5.37299 sequence = ATTGGATCCATT Site: position = -38 score = 5.51815 sequence = ATTGGATCCAAT Gene: PA4904: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Pseudomonas putida KT2440 Site: position = -41 score = 5.26691 sequence = AATGGATCCATT Site: position = -126 score = 4.79437 sequence = AATGGATCCACT Gene: PP3736: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = -138 score = 4.61577 sequence = CATGGATCCATT Site: position = -42 score = 4.58324 sequence = TGTGGATCCATA Gene: PSPTO2904: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Pseudomonas fluorescens Pf-5 Site: position = -44 score = 5.26691 sequence = AATGGATCCATT Site: position = -150 score = 5.04234 sequence = AATGGATCCATA Site: position = -128 score = 4.71496 sequence = ACTGGATCCAAA Gene: PFL_3471: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
| vanB |
Gene: PA4905: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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Gene: PP3737: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: PSPTO2905: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: PFL_3472: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
| CRON 2. | |||||||||
| vanK |
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Pseudomonas aeruginosa PAO1 Site: position = -168 score = 5.41207 sequence = AATGGATCCAAT Gene: PA4903: 4-hydroxybenzoate/vanillate transporter |
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Pseudomonas putida KT2440 Site: position = -195 score = 4.80781 sequence = TGTGGATCCATT Gene: PP3740: 4-hydroxybenzoate/vanillate transporter |
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Pseudomonas fluorescens Pf-5 Site: position = -203 score = 4.80781 sequence = TGTGGATCCATT Gene: PFL_3480: 4-hydroxybenzoate/vanillate transporter |
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4-hydroxybenzoate/vanillate transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |