Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog VanR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Vanillate utilization
Effector: Vanillate
Phylum: Proteobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 3 2
Pseudomonas entomophila L48
Pseudomonas putida KT2440 3 2
Pseudomonas syringae pv. tomato str. DC3000 2 1
Pseudomonas fluorescens Pf-5 3 2
Pseudomonas mendocina ymp
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
vanA
*
Pseudomonas aeruginosa PAO1

Site:
position = -13
score = 3.45211
sequence = AGAGGATCCGAC

Site:
position = -222
score = 5.37299
sequence = ATTGGATCCATT

Site:
position = -38
score = 5.51815
sequence = ATTGGATCCAAT

Gene: PA4904: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Pseudomonas entomophila L48
*
Pseudomonas putida KT2440

Site:
position = -41
score = 5.26691
sequence = AATGGATCCATT

Site:
position = -126
score = 4.79437
sequence = AATGGATCCACT

Gene: PP3736: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -138
score = 4.61577
sequence = CATGGATCCATT

Site:
position = -42
score = 4.58324
sequence = TGTGGATCCATA

Gene: PSPTO2904: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
*
Pseudomonas fluorescens Pf-5

Site:
position = -44
score = 5.26691
sequence = AATGGATCCATT

Site:
position = -150
score = 5.04234
sequence = AATGGATCCATA

Site:
position = -128
score = 4.71496
sequence = ACTGGATCCAAA

Gene: PFL_3471: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
vanB
 
Pseudomonas aeruginosa PAO1

Gene: PA4905: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440

Gene: PP3737: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2905: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3472: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
 
CRON 2.
vanK
*
Pseudomonas aeruginosa PAO1

Site:
position = -168
score = 5.41207
sequence = AATGGATCCAAT

Gene: PA4903: 4-hydroxybenzoate/vanillate transporter
 
Pseudomonas entomophila L48
*
Pseudomonas putida KT2440

Site:
position = -195
score = 4.80781
sequence = TGTGGATCCATT

Gene: PP3740: 4-hydroxybenzoate/vanillate transporter
 
Pseudomonas syringae pv. tomato str. DC3000
*
Pseudomonas fluorescens Pf-5

Site:
position = -203
score = 4.80781
sequence = TGTGGATCCATT

Gene: PFL_3480: 4-hydroxybenzoate/vanillate transporter
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
4-hydroxybenzoate/vanillate transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise