Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Pseudomonas fluorescens Pf-5

Properties
Regulator type: Transcription factor
TF locus tag: PFL_3933
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Pseudomonadaceae
Statistics of regulated genes:
- Genes 7
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -158
Score: 6.5
Sequence: CTTTACGTTAACGTAAAC
Position: -115
Score: 6
Sequence: CTTTACGTAAACGTCAAC
Locus tag: PFL_3935
Name: aacS
Funciton: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
aacS
Acetoacetyl-CoA synthetase (EC 6.2.1.16)

Position: -131
Score: 6
Sequence: GTTGACGTTTACGTAAAG
Position: -88
Score: 6.5
Sequence: GTTTACGTTAACGTAAAG
Locus tag: PFL_3936
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PFL_3937
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PFL_3938
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PFL_3939
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)

Position: -59
Score: 5.5
Sequence: CTTGACGTATACGTCAAC
Locus tag: PFL_3933
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: PFL_3934
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD