Regulog LiuR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Pseudomonadaceae
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 7 | 2 |
| Pseudomonas entomophila L48 | 7 | 3 |
| Pseudomonas putida KT2440 | 7 | 3 |
| Pseudomonas syringae pv. tomato str. DC3000 | 6 | 2 |
| Pseudomonas fluorescens Pf-5 | 7 | 3 |
| Pseudomonas mendocina ymp | 6 | 1 |
| Pseudomonas stutzeri A1501 | 11 | 3 |
| Azotobacter vinelandii AvOP | 6 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| livG |
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Pseudomonas stutzeri A1501 Site: position = -70 score = 5.36225 sequence = GTTTACGTAAAGGTCATG Site: position = -76 score = 5.18866 sequence = GTTATCGTTTACGTAAAG Site: position = -99 score = 4.60158 sequence = CTTGCCGTATACGGAAAC Gene: PST_3208: Branched-chain amino acid ABC transporter, ATP-binding protein LivG |
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Branched-chain amino acid ABC transporter, ATP-binding protein LivG |
| livF |
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Gene: PST_3207: Branched-chain amino acid ABC transporter, ATP-binding protein LivF |
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Branched-chain amino acid ABC transporter, ATP-binding protein LivF |
| livK |
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Gene: PST_3206: Branched-chain amino acid ABC transporter, periplasmic component LivK |
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Branched-chain amino acid ABC transporter, periplasmic component LivK |
| livH |
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Gene: PST_3205: Branched-chain amino acid ABC transporter, permease protein LivH |
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Branched-chain amino acid ABC transporter, permease protein LivH |
| livM |
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Gene: PST_3204: Branched-chain amino acid ABC transporter, permease protein LivM |
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Branched-chain amino acid ABC transporter, permease protein LivM |
| CRON 2. | |||||||||
| aacS |
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Pseudomonas aeruginosa PAO1 Site: position = -127 score = 6.51201 sequence = CTTTACGTTAACGTAAAC Site: position = -133 score = 5.46454 sequence = GTTTACCTTTACGTTAAC Gene: PA2557: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Pseudomonas entomophila L48 Site: position = -81 score = 5.92222 sequence = CTTTACGTAAACGTAAAT Site: position = -131 score = 6.18168 sequence = GTTGACGTTAACGTAAAC Gene: PSEEN3384: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Pseudomonas putida KT2440 Site: position = -80 score = 5.92222 sequence = CTTTACGTAAACGTAAAT Site: position = -131 score = 6.51201 sequence = CTTTACGTTAACGTAAAC Gene: PP4063: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Pseudomonas fluorescens Pf-5 Site: position = -115 score = 6.0297 sequence = CTTTACGTAAACGTCAAC Site: position = -158 score = 6.51201 sequence = CTTTACGTTAACGTAAAC Gene: PFL_3935: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Pseudomonas stutzeri A1501 Site: position = -98 score = 6.17627 sequence = CTTTACGTTAACGTAATC Site: position = -104 score = 4.63046 sequence = AGTTACCTTTACGTTAAC Gene: PST_3211: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
| CRON 3. | |||||||||
| liuR |
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Pseudomonas aeruginosa PAO1 Site: position = -34 score = 5.46454 sequence = GTTAACGTAAAGGTAAAC Site: position = -40 score = 6.53232 sequence = CTTTACGTTAACGTAAAG Gene: PA2016: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Pseudomonas entomophila L48 Site: position = -59 score = 5.85741 sequence = CTTGACGTATACGTAAAC Gene: PSEEN2982: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Pseudomonas putida KT2440 Site: position = -59 score = 5.5474 sequence = CTTGACGTATACGTCAAC Gene: PP3539: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = -62 score = 5.73784 sequence = CTTGACGCTTACGTAAAG Gene: PSPTO2743: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Pseudomonas fluorescens Pf-5 Site: position = -59 score = 5.5474 sequence = CTTGACGTATACGTCAAC Gene: PFL_3933: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Pseudomonas mendocina ymp Site: position = -23 score = 5.46454 sequence = GTTAACGTAAAGGTAAAC Site: position = -29 score = 6.51201 sequence = GTTTACGTTAACGTAAAG Gene: Pmen_2034: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Azotobacter vinelandii AvOP Site: position = -32 score = 5.36161 sequence = GTTTACGTAAAGGTAATA Site: position = -38 score = 6.33972 sequence = GTTTACGTTTACGTAAAG Gene: Avin_49570: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| liuA |
Gene: PA2015: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
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Pseudomonas entomophila L48 Site: position = -173 score = 6.18168 sequence = GTTTACGTTAACGTCAAC Site: position = -217 score = 5.14911 sequence = GTTTACGTAAAGGTTATG Site: position = -223 score = 5.92222 sequence = ATTTACGTTTACGTAAAG Gene: PSEEN3386: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
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Pseudomonas putida KT2440 Site: position = -97 score = 6.51201 sequence = GTTTACGTTAACGTAAAG Site: position = -148 score = 5.92222 sequence = ATTTACGTTTACGTAAAG Gene: PP4064: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
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Pseudomonas syringae pv. tomato str. DC3000 Site: position = 109 score = 6.51201 sequence = gTTTACGTTAACGTAAAG Gene: PSPTO2739: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
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Pseudomonas fluorescens Pf-5 Site: position = -88 score = 6.51201 sequence = GTTTACGTTAACGTAAAG Site: position = -131 score = 6.0297 sequence = GTTGACGTTTACGTAAAG Gene: PFL_3936: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Pmen_2033: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
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Pseudomonas stutzeri A1501 Site: position = -133 score = 6.53232 sequence = CTTTACGTTAACGTAAAG Gene: PST_3213: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Avin_49560: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
| liuB |
Gene: PA2014: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: PSEEN3387: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: PP4065: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: PSPTO2738: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: PFL_3937: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Pmen_2032: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: PST_3214: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Avin_49550: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
| liuC |
Gene: PA2013: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: PSEEN3388: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: PP4066: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: PSPTO2737: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: PFL_3938: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Pmen_2031: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: PST_3215: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Avin_49530: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
| liuD |
Gene: PA2012: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: PSEEN3389: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: PP4067: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: PSPTO2736: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: PFL_3939: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Pmen_2030: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: PST_3216: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Avin_49520: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
| liuE |
Gene: PA2011: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: PSEEN2983: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: PP3540: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: PSPTO2742: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: PFL_3934: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Pmen_2029: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: PST_3217: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Avin_49510: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |