Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LiuR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 7 2
Pseudomonas entomophila L48 7 3
Pseudomonas putida KT2440 7 3
Pseudomonas syringae pv. tomato str. DC3000 6 2
Pseudomonas fluorescens Pf-5 7 3
Pseudomonas mendocina ymp 6 1
Pseudomonas stutzeri A1501 11 3
Azotobacter vinelandii AvOP 6 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
livG
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*
Pseudomonas stutzeri A1501

Site:
position = -70
score = 5.36225
sequence = GTTTACGTAAAGGTCATG

Site:
position = -76
score = 5.18866
sequence = GTTATCGTTTACGTAAAG

Site:
position = -99
score = 4.60158
sequence = CTTGCCGTATACGGAAAC

Gene: PST_3208: Branched-chain amino acid ABC transporter, ATP-binding protein LivG
 
Azotobacter vinelandii AvOP
Branched-chain amino acid ABC transporter, ATP-binding protein LivG
livF
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_3207: Branched-chain amino acid ABC transporter, ATP-binding protein LivF
 
Azotobacter vinelandii AvOP
Branched-chain amino acid ABC transporter, ATP-binding protein LivF
livK
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_3206: Branched-chain amino acid ABC transporter, periplasmic component LivK
 
Azotobacter vinelandii AvOP
Branched-chain amino acid ABC transporter, periplasmic component LivK
livH
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_3205: Branched-chain amino acid ABC transporter, permease protein LivH
 
Azotobacter vinelandii AvOP
Branched-chain amino acid ABC transporter, permease protein LivH
livM
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_3204: Branched-chain amino acid ABC transporter, permease protein LivM
 
Azotobacter vinelandii AvOP
Branched-chain amino acid ABC transporter, permease protein LivM
 
CRON 2.
aacS
*
Pseudomonas aeruginosa PAO1

Site:
position = -127
score = 6.51201
sequence = CTTTACGTTAACGTAAAC

Site:
position = -133
score = 5.46454
sequence = GTTTACCTTTACGTTAAC

Gene: PA2557: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
*
Pseudomonas entomophila L48

Site:
position = -81
score = 5.92222
sequence = CTTTACGTAAACGTAAAT

Site:
position = -131
score = 6.18168
sequence = GTTGACGTTAACGTAAAC

Gene: PSEEN3384: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
*
Pseudomonas putida KT2440

Site:
position = -80
score = 5.92222
sequence = CTTTACGTAAACGTAAAT

Site:
position = -131
score = 6.51201
sequence = CTTTACGTTAACGTAAAC

Gene: PP4063: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
 
Pseudomonas syringae pv. tomato str. DC3000
*
Pseudomonas fluorescens Pf-5

Site:
position = -115
score = 6.0297
sequence = CTTTACGTAAACGTCAAC

Site:
position = -158
score = 6.51201
sequence = CTTTACGTTAACGTAAAC

Gene: PFL_3935: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
 
Pseudomonas mendocina ymp
*
Pseudomonas stutzeri A1501

Site:
position = -98
score = 6.17627
sequence = CTTTACGTTAACGTAATC

Site:
position = -104
score = 4.63046
sequence = AGTTACCTTTACGTTAAC

Gene: PST_3211: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
 
Azotobacter vinelandii AvOP
Acetoacetyl-CoA synthetase (EC 6.2.1.16)
 
CRON 3.
liuR
*
Pseudomonas aeruginosa PAO1

Site:
position = -34
score = 5.46454
sequence = GTTAACGTAAAGGTAAAC

Site:
position = -40
score = 6.53232
sequence = CTTTACGTTAACGTAAAG

Gene: PA2016: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Pseudomonas entomophila L48

Site:
position = -59
score = 5.85741
sequence = CTTGACGTATACGTAAAC

Gene: PSEEN2982: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Pseudomonas putida KT2440

Site:
position = -59
score = 5.5474
sequence = CTTGACGTATACGTCAAC

Gene: PP3539: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -62
score = 5.73784
sequence = CTTGACGCTTACGTAAAG

Gene: PSPTO2743: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Pseudomonas fluorescens Pf-5

Site:
position = -59
score = 5.5474
sequence = CTTGACGTATACGTCAAC

Gene: PFL_3933: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Pseudomonas mendocina ymp

Site:
position = -23
score = 5.46454
sequence = GTTAACGTAAAGGTAAAC

Site:
position = -29
score = 6.51201
sequence = GTTTACGTTAACGTAAAG

Gene: Pmen_2034: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Pseudomonas stutzeri A1501
*
Azotobacter vinelandii AvOP

Site:
position = -32
score = 5.36161
sequence = GTTTACGTAAAGGTAATA

Site:
position = -38
score = 6.33972
sequence = GTTTACGTTTACGTAAAG

Gene: Avin_49570: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuA
 
Pseudomonas aeruginosa PAO1

Gene: PA2015: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
*
Pseudomonas entomophila L48

Site:
position = -173
score = 6.18168
sequence = GTTTACGTTAACGTCAAC

Site:
position = -217
score = 5.14911
sequence = GTTTACGTAAAGGTTATG

Site:
position = -223
score = 5.92222
sequence = ATTTACGTTTACGTAAAG

Gene: PSEEN3386: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
*
Pseudomonas putida KT2440

Site:
position = -97
score = 6.51201
sequence = GTTTACGTTAACGTAAAG

Site:
position = -148
score = 5.92222
sequence = ATTTACGTTTACGTAAAG

Gene: PP4064: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = 109
score = 6.51201
sequence = gTTTACGTTAACGTAAAG

Gene: PSPTO2739: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
*
Pseudomonas fluorescens Pf-5

Site:
position = -88
score = 6.51201
sequence = GTTTACGTTAACGTAAAG

Site:
position = -131
score = 6.0297
sequence = GTTGACGTTTACGTAAAG

Gene: PFL_3936: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Pseudomonas mendocina ymp

Gene: Pmen_2033: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
*
Pseudomonas stutzeri A1501

Site:
position = -133
score = 6.53232
sequence = CTTTACGTTAACGTAAAG

Gene: PST_3213: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Azotobacter vinelandii AvOP

Gene: Avin_49560: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
liuB
 
Pseudomonas aeruginosa PAO1

Gene: PA2014: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Pseudomonas entomophila L48

Gene: PSEEN3387: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Pseudomonas putida KT2440

Gene: PP4065: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2738: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3937: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Pseudomonas mendocina ymp

Gene: Pmen_2032: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Pseudomonas stutzeri A1501

Gene: PST_3214: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Azotobacter vinelandii AvOP

Gene: Avin_49550: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
 
Pseudomonas aeruginosa PAO1

Gene: PA2013: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Pseudomonas entomophila L48

Gene: PSEEN3388: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Pseudomonas putida KT2440

Gene: PP4066: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2737: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3938: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Pseudomonas mendocina ymp

Gene: Pmen_2031: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Pseudomonas stutzeri A1501

Gene: PST_3215: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Azotobacter vinelandii AvOP

Gene: Avin_49530: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
 
Pseudomonas aeruginosa PAO1

Gene: PA2012: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Pseudomonas entomophila L48

Gene: PSEEN3389: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Pseudomonas putida KT2440

Gene: PP4067: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2736: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3939: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Pseudomonas mendocina ymp

Gene: Pmen_2030: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Pseudomonas stutzeri A1501

Gene: PST_3216: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Azotobacter vinelandii AvOP

Gene: Avin_49520: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuE
 
Pseudomonas aeruginosa PAO1

Gene: PA2011: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Pseudomonas entomophila L48

Gene: PSEEN2983: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Pseudomonas putida KT2440

Gene: PP3540: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO2742: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_3934: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Pseudomonas mendocina ymp

Gene: Pmen_2029: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Pseudomonas stutzeri A1501

Gene: PST_3217: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Azotobacter vinelandii AvOP

Gene: Avin_49510: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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