Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PhrR in Pseudomonas fluorescens Pf-5

Properties
Regulator type: Transcription factor
TF locus tag: PFL_5146
Regulator family: MerR
Regulation mode: repressor
Biological process: Light-dependent DNA repair
Effector: Blue light; Adenosylcobalamin
Regulog: PhrR - Pseudomonadaceae
Statistics of regulated genes:
- Genes 17
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 43 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -97
Score: 6.5
Sequence: TATACAAATAATTTGACTTGTACA
Locus tag: PFL_5145
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PFL_5146
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PFL_5147
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: PFL_5148
Name: PF07366
Funciton: Protein of unknown function DUF1486
Locus tag: PFL_5149
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: PFL_5150
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: PFL_5151
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: PFL_5152
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: PFL_5153
Name: PF11086
Funciton: Protein of unknown function DUF2878
PFL_5145
COG3272
COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
PFL_5146
phrR
Transcriptional regulator, MerR family, associated with photolyase
PFL_5147
phr
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
PFL_5148
PF07366
Protein of unknown function DUF1486
PFL_5149
PF00106
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
PFL_5150
PF01593
Flavin containing amine oxidoreductase
PFL_5151
PF07103
Protein of unknown function DUF1365
PFL_5152
PF02353
S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
PFL_5153
PF11086
Protein of unknown function DUF2878
Position: -147
Score: 5.6
Sequence: TGTACAATATTGTTTTTTGGTATA
Locus tag: PFL_5142
Name: COG1090
Funciton: Predicted nucleoside-diphosphate sugar epimerase
Locus tag: PFL_5141
Name: hemH
Funciton: Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)
PFL_5142
COG1090
Predicted nucleoside-diphosphate sugar epimerase
PFL_5141
hemH
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)
Position: -134
Score: 6.1
Sequence: TGTACATGAAACTTTTTTTGTACA
Locus tag: PFL_2328
Name: mcp3
Funciton: Methyl-accepting chemotaxis protein
PFL_2328
mcp3
Methyl-accepting chemotaxis protein
Position: -229
Score: 4.3
Sequence: TGTACAGATAAAAAGTATTGAATC
Position: -190
Score: 4.8
Sequence: TGTACAAGTATTTGGGCTTATAAG
Position: -145
Score: 4.4
Sequence: TGTACAAAAAATTAAATTGTCGTA
Locus tag: PFL_2258
Name: folE
Funciton: GTP cyclohydrolase I (EC 3.5.4.16) type 1
Locus tag: PFL_2259
Name: PSEEN2737
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: PFL_2260
Name: PF12915
Funciton: Protein of unknown function (DUF3833)
PFL_2258
folE
GTP cyclohydrolase I (EC 3.5.4.16) type 1
PFL_2259
PSEEN2737
FIG026291: Hypothetical periplasmic protein
PFL_2260
PF12915
Protein of unknown function (DUF3833)
Position: -71
Score: 5.7
Sequence: TATACCAAAAAACAATATTGTACA
Locus tag: PFL_5143
Name: COG3380
Funciton: Predicted NAD/FAD-dependent oxidoreductase
Locus tag: PFL_5144
Name: PF09493
Funciton: Tryptophan-rich protein (DUF2389)
PFL_5143
COG3380
Predicted NAD/FAD-dependent oxidoreductase
PFL_5144
PF09493
Tryptophan-rich protein (DUF2389)
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