Regulon of Zur in Pseudomonas fluorescens Pf-5
| Regulator type: | Transcription factor |
| TF locus tag: | PFL_0078 |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Zinc homeostasis |
| Effector: | Zinc ion, (Zn2+) |
| Regulog: | Zur - Pseudomonadaceae |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - Zur
- By TF family - FUR
- By effector - Zinc ion, (Zn2+)
- By pathway - Zinc homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -113
Score: 5.2 Sequence: GAGATGTTATATTGTATCAATCA
Locus tag: PFL_4912
Name: omr Funciton: Zinc-regulated outer membrane receptor |
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omr
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Zinc-regulated outer membrane receptor
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Position: -48
Score: 5.9 Sequence: GTGTTGTTATAATATAACATAAA
Locus tag: PFL_6174
Name: dksA2 Funciton: C4-type zinc finger protein, DksA/TraR family
Locus tag: PFL_6173
Name: yciC Funciton: Putative metal chaperone, GTPase of COG0523 family
Locus tag: PFL_6172
Name: PF08856 Funciton: hypothetical protein
Locus tag: PFL_6171
Name: yciC2 Funciton: Putative metal chaperone, GTPase of COG0523 family |
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dksA2
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C4-type zinc finger protein, DksA/TraR family
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yciC
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Putative metal chaperone, GTPase of COG0523 family
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PF08856
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hypothetical protein
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yciC2
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Putative metal chaperone, GTPase of COG0523 family
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Position: -96
Score: 5.4 Sequence: TTTATGTTATATTATAACAACAC
Locus tag: PFL_6175
Name: PA5537 Funciton: hypothetical protein |
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PA5537
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hypothetical protein
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Position: -50
Score: 5.1 Sequence: GCATTGTTATAATATAACATGTG
Locus tag: PFL_6177
Name: folE2 Funciton: GTP cyclohydrolase I (EC 3.5.4.16) type 2
Locus tag: PFL_6178
Name: znuC2 Funciton: Zinc ABC transporter, ATP-binding protein ZnuC
Locus tag: PFL_6179
Name: znuB2 Funciton: Zinc ABC transporter, inner membrane permease protein ZnuB
Locus tag: PFL_6180
Name: znuA2 Funciton: Zinc ABC transporter, periplasmic-binding protein ZnuA
Locus tag: PFL_6181
Name: hisI2 Funciton: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
Locus tag: PFL_6182
Name: can Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: PFL_6183
Name: pyrC2 Funciton: Dihydroorotase (EC 3.5.2.3) |
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folE2
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GTP cyclohydrolase I (EC 3.5.4.16) type 2
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znuC2
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Zinc ABC transporter, ATP-binding protein ZnuC
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znuB2
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Zinc ABC transporter, inner membrane permease protein ZnuB
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znuA2
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Zinc ABC transporter, periplasmic-binding protein ZnuA
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hisI2
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Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
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can
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Carbonic anhydrase (EC 4.2.1.1)
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pyrC2
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Dihydroorotase (EC 3.5.2.3)
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Position: -54
Score: 5.5 Sequence: CGATTGTTATAAGATCACATAAC
Locus tag: PFL_5528
Name: zbp Funciton: Predicted zinc-binding protein |
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zbp
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Predicted zinc-binding protein
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Position: -102
Score: 5.6 Sequence: CACATGTTATATTATAACAATGC
Locus tag: PFL_6176
Name: amiA Funciton: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) |
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amiA
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N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)
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Position: -51
Score: 5.3 Sequence: GATATGTTATTGTATAACGCATC
Locus tag: PFL_4896
Name: rpmE2 Funciton: LSU ribosomal protein L31p |
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rpmE2
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LSU ribosomal protein L31p
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Position: -44
Score: 3.7 Sequence: AACGGGTAACATAATAACGTCTC
Locus tag: PFL_0078
Name: zur Funciton: Zinc uptake regulation protein ZUR
Locus tag: PFL_0077
Name: znuC Funciton: Zinc ABC transporter, ATP-binding protein ZnuC
Locus tag: PFL_0076
Name: znuB Funciton: Zinc ABC transporter, inner membrane permease protein ZnuB |
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zur
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Zinc uptake regulation protein ZUR
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znuC
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Zinc ABC transporter, ATP-binding protein ZnuC
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znuB
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Zinc ABC transporter, inner membrane permease protein ZnuB
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Position: -36
Score: 4.6 Sequence: GAGACGTTATTATGTTACCCGTT
Locus tag: PFL_0079
Name: znuA Funciton: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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znuA
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Zinc ABC transporter, periplasmic-binding protein ZnuA
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Position: -47
Score: 4.8 Sequence: AATATGATATGTTATTACATTAG
Locus tag: PFL_3806
Name: rpmJ Funciton: LSU ribosomal protein L36p |
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rpmJ
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LSU ribosomal protein L36p
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |