Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Rhizobium etli CFN 42

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AduR Adenosine Adenosine utilization 1 1
TF AfrR 1,5-Anhydro-d-Fructose utilization 1 2
TF AglR Alpha-glucoside; Maltose; Trehalose; Sucrose Alpha-glucosides utilization 2 4
TF AnsR Aspartate utilization; Asparagine degradation 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 1
TF CueR Copper ion, (Cu+) Copper resistance 1 1
TF EutR Ethanolamine Ethanolamine utilization 2 4
TF EutR Ectoine utilization 4 4
TF FixJ Oxygen Oxidative stress response; Nitrogen fixation 4 2
TF FnrN/FixK/AadR Oxygen Oxidative stress response; Nitrogen fixation 21 18
TF HrcA Heat shock Heat shock response 4 4
TF HutC cis-Urocanic acid Histidine utilization 5 2
TF HypR Proline Proline and 4-hydrohyproline utilization 4 2
TF IdnR L-idonate Idonate utilization 5 7
TF IolR Inositol utilization 2 4
TF Irr Heme Iron homeostasis 16 7
TF LexA DNA damage SOS response 23 19
TF LiuR Branched-chain amino acid degradation 11 10
TF MdcY Malonate metabolism 2 2
TF Mll0059 3 5
TF Mll1683 Sugar utilization 3 4
TF MocR rhizopine Rhizopine catabolism 2 2
TF ModE Molybdate Molybdenum homeostasis 1 2
TF Mur Iron ion, (Fe2+) Manganese homeostasis 1 1
TF NadQ NAD biosynthesis 1 2
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 5 1
TF NifA Nitrogen fixation 18 10
TF NnrR Nitric oxide Denitrification 6 9
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 2 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 9 8
TF PckR Central carbohydrate metabolism 14 13
TF PhnF Phosphonate utilization 2 2
TF RL3595 Sugar utilization 2 2
TF RL4253 Sugar utilization 2 4
TF RhaR Rhamnose Rhamnose utilization 2 6
TF RhiR Rhamogalacturonate oligosaccharides Rhamnogalacturonides utilization 2 4
TF RirA Iron ion, (Fe2+) Iron homeostasis 18 19
TF RutR Uracil Pyrimidine utilization 7 5
TF SMb20039 1 1
TF SMb20537 Sugar utilization 2 2
TF SMb20667 Sugar utilization 2 4
TF SMb20717 Sugar utilization 2 4
TF SMb21598 Sugar utilization 2 2
TF SMb21706 Sugar utilization 1 2
TF SMc04260 Sugar utilization 4 2
TF SahR S-adenosylhomocysteine Methionine metabolism 4 4
TF SmoR Mannitol; Sorbitol Sorbitol utilization; Mannitol utilization 2 2
TF SocR Mannopine; Deoxyfructosyl glutamine Santhopine utilization 2 4
TF SoxR Paraquat Superoxide stress response 4 2
TF ThuR Trehalose Trehalose utilization 3 5
TF UxuR2 Galacturonate utilization 3 1
TF XylR Xylose Xylose utilization 4 2
TF XylR Xylose Xylose utilization 3 3
TF YrdX 1 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 6
TF pRL90265 Sugar utilization 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 8 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA Glycine Glycine Glycine metabolism 2 2
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 3
RNA mini-ykkC Multidrug resistance 2 2
RNA serC Serine biosynthesis 1 1
RNA ybhL 1 1
RNA ykkC-yxkD Multidrug resistance 1 1
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