Regulon of LiuR in Rhizobium etli CFN 42

Properties
Regulator type:	Transcription factor
TF locus tag:	RHE_CH02217
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Rhizobiales
Statistics of regulated genes:
- Genes	17
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 84 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Rhizobiales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -41 Score: 4.5 Sequence: AATAACGTTGACGTTAAC Position: -35 Score: 5.7 Sequence: GTTGACGTTAACGTCAAA Locus tag: RHE_CH01182 Name: SMc00041 Funciton: hypothetical protein
	RHE_CH01182	SMc00041	hypothetical protein
Position: -37 Score: 5.8 Sequence: ATTGACGTTTTCGTAAAC Locus tag: RHE_CH00505 Name: PF03060 Funciton: Dioxygenases related to 2-nitropropane dioxygenase
	RHE_CH00505	PF03060	Dioxygenases related to 2-nitropropane dioxygenase
Position: -83 Score: 6.4 Sequence: ATTGACGTTTACGTAAAA Locus tag: RHE_CH00905 Name: acdH2 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) Locus tag: RHE_CH00906 Name: echH Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	RHE_CH00905	acdH2	Acyl-CoA dehydrogenase (EC 1.3.99.3)
	RHE_CH00906	echH	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -156 Score: 6 Sequence: TCTTACGTTTACGTAAGA Locus tag: RHE_CH03891 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: RHE_CH03890 Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Locus tag: RHE_CH03889 Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Locus tag: RHE_CH03888 Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
	RHE_CH03891	mdh	Malate dehydrogenase (EC 1.1.1.37)
	RHE_CH03890	sucC	Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
	RHE_CH03889	sucD	Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
	RHE_CH03888	sucA	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Position: -177 Score: 5.9 Sequence: GTTGACGTATACGTAAAC Locus tag: RHE_CH03792 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: RHE_CH03793 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit Locus tag: RHE_CH03794 Name: hbdA Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
	RHE_CH03792	etfB	Electron transfer flavoprotein, beta subunit
	RHE_CH03793	etfA	Electron transfer flavoprotein, alpha subunit
	RHE_CH03794	hbdA	3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Position: -159 Score: 5.9 Sequence: GTTGACGTTTACGTCAAG Locus tag: RHE_CH00478 Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	RHE_CH00478	fadD	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -158 Score: 5.9 Sequence: ATTGACGTTAACGTAAGC Locus tag: RHE_CH01308 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	RHE_CH01308	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -87 Score: 6.1 Sequence: TCTGACGTTTACGCAAAC Locus tag: RHE_CH00557 Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) Locus tag: RHE_CH00558 Name: acdA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Locus tag: RHE_CH00559 Name: acdB Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	RHE_CH00557	acdH	Acyl-CoA dehydrogenase (EC 1.3.99.3)
	RHE_CH00558	acdA	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	RHE_CH00559	acdB	Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -53 Score: 5.2 Sequence: ATTGACTATTACGTAAAA Locus tag: RHE_CH02217 Name: liuR1 Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	RHE_CH02217	liuR1	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Rhizobium etli CFN 42

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --