Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of SocR in Rhizobium etli CFN 42

Properties
Regulator type: Transcription factor
TF locus tag: RHE_PF00256
Regulator family: LacI
Regulation mode: repressor
Biological process: Santhopine utilization
Effector: Mannopine; Deoxyfructosyl glutamine
Regulog: SocR - Rhizobiales
Statistics of regulated genes:
- Genes 4
- Operons 2
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -96
Score: 5.4
Sequence: CAATGATACCGGTCTCCAAT
Position: -75
Score: 6
Sequence: AAAAGAGACCGGTCTCACGA
Locus tag: RHE_PF00256
Name: socR
Funciton: Santhopine catabolism transcriptional regulator, LacI family
socR
Santhopine catabolism transcriptional regulator, LacI family

Position: -126
Score: 6
Sequence: TCGTGAGACCGGTCTCTTTT
Position: -105
Score: 5.4
Sequence: ATTGGAGACCGGTATCATTG
Locus tag: RHE_PF00255
Name: socA
Funciton: Deoxyfructosyl glutamine and mannopine ABC transporter, periplasmic amino acid-binding protein
Locus tag: RHE_PF00254
Name: socB
Funciton: Deoxyfructosyl glutamine and mannopine ABC transporter, ATP-binding protein fused to permease component
Locus tag: RHE_PF00253
Name: socD
Funciton: Fructosyl-amino acid oxidase (EC 1.5.3.-)
socA
Deoxyfructosyl glutamine and mannopine ABC transporter, periplasmic amino acid-binding protein
socB
Deoxyfructosyl glutamine and mannopine ABC transporter, ATP-binding protein fused to permease component
socD
Fructosyl-amino acid oxidase (EC 1.5.3.-)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD