Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SocR - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Santhopine utilization
Effector: Mannopine; Deoxyfructosyl glutamine
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 5 2
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 4 2
Rhizobium leguminosarum bv. viciae 3841 4 2
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
socA
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -141
score = 6.0005
sequence = CATTGAGACCGGTCTCAGTA

Site:
position = -162
score = 6.2698
sequence = CAAAGAGACCGGTCTCATTC

Gene: Atu5006: Deoxyfructosyl glutamine and mannopine ABC transporter, periplasmic amino acid-binding protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -105
score = 5.39161
sequence = ATTGGAGACCGGTATCATTG

Site:
position = -126
score = 5.95688
sequence = TCGTGAGACCGGTCTCTTTT

Gene: RHE_PF00255: Deoxyfructosyl glutamine and mannopine ABC transporter, periplasmic amino acid-binding protein
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -104
score = 5.43642
sequence = ATCAGAGACCGGTATCTTGT

Site:
position = -125
score = 6.1339
sequence = TTGTGAGACCGGTCTCTTTA

Gene: pRL120733: Deoxyfructosyl glutamine and mannopine ABC transporter, periplasmic amino acid-binding protein
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Deoxyfructosyl glutamine and mannopine ABC transporter, periplasmic amino acid-binding protein
socB
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu5005: Deoxyfructosyl glutamine and mannopine ABC transporter, ATP-binding protein fused to permease component
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_PF00254: Deoxyfructosyl glutamine and mannopine ABC transporter, ATP-binding protein fused to permease component
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL120734: Deoxyfructosyl glutamine and mannopine ABC transporter, ATP-binding protein fused to permease component
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Deoxyfructosyl glutamine and mannopine ABC transporter, ATP-binding protein fused to permease component
socC
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu5004: NAD-depending oxidoreductase involved in deoxyfructosyl glutamine utilization
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1

Gene: Meso_4517: NAD-depending oxidoreductase involved in deoxyfructosyl glutamine utilization
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
NAD-depending oxidoreductase involved in deoxyfructosyl glutamine utilization
socD
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu5003: Fructosyl-amino acid oxidase (EC 1.5.3.-)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_PF00253: Fructosyl-amino acid oxidase (EC 1.5.3.-)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: pRL120735: Fructosyl-amino acid oxidase (EC 1.5.3.-)
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Fructosyl-amino acid oxidase (EC 1.5.3.-)
 
CRON 2.
socR
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -104
score = 6.0005
sequence = TACTGAGACCGGTCTCAATG

Site:
position = -83
score = 6.2698
sequence = GAATGAGACCGGTCTCTTTG

Gene: Atu5007: Santhopine catabolism transcriptional regulator, LacI family
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -96
score = 5.39161
sequence = CAATGATACCGGTCTCCAAT

Site:
position = -75
score = 5.95688
sequence = AAAAGAGACCGGTCTCACGA

Gene: RHE_PF00256: Santhopine catabolism transcriptional regulator, LacI family
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -76
score = 6.1339
sequence = TAAAGAGACCGGTCTCACAA

Site:
position = -97
score = 5.43642
sequence = ACAAGATACCGGTCTCTGAT

Gene: pRL120732: Santhopine catabolism transcriptional regulator, LacI family
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Santhopine catabolism transcriptional regulator, LacI family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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