# TF - YrdX: RHE_CH01275
>RHE_CH01276(COG5349) Score=7.3 Pos=-55 [Rhizobium etli CFN 42]
ATTGCATG--------ATTGACTG
>RHE_CH01276(COG5349) Score=6.5 Pos=-66 [Rhizobium etli CFN 42]
ATTGTATC--------ATTGCATG
# TF - NadQ: RHE_PE00442
>RHE_PE00441(nadA) Score=5.6 Pos=-68 [Rhizobium etli CFN 42]
ATATGCTCATAGCGAGAATAT
>RHE_PE00441(nadA) Score=6.3 Pos=-34 [Rhizobium etli CFN 42]
ATATGCTCAAATCGAGCATAA
# TF - NrtR: RHE_PF00027
>RHE_PF00026(nrtX) Score=5.7 Pos=-81 [Rhizobium etli CFN 42]
TTAGTTGACATTTCTCACTAA
>RHE_PF00027(nrtR) Score=5.7 Pos=-68 [Rhizobium etli CFN 42]
TTAGTGAGAAATGTCAACTAA
>RHE_PF00027(nrtR) Score=5.9 Pos=-46 [Rhizobium etli CFN 42]
TTAGTTGAAGATTTACACTAA
>RHE_PF00026(nrtX) Score=5.9 Pos=-103 [Rhizobium etli CFN 42]
TTAGTGTAAATCTTCAACTAA
# TF - NrdR: RHE_CH01509
>RHE_CH01753(nrdJ) Score=4.7 Pos=-411 [Rhizobium etli CFN 42]
CCACAACATGTTGTGG
>RHE_CH01753(nrdJ) Score=5.3 Pos=-167 [Rhizobium etli CFN 42]
ATACTATATTTAGCGT
>RHE_CH01753(nrdJ) Score=4.4 Pos=-136 [Rhizobium etli CFN 42]
CCACAAGATACAGGAA
>RHE_CH03718(nrdH) Score=5.1 Pos=-486 [Rhizobium etli CFN 42]
GTACTATATCTAGTGT
# TF - SahR: RHE_CH02872
>RHE_CH00031(ahcY) Score=6.3 Pos=-122 [Rhizobium etli CFN 42]
ATATAAAGACTTCTTTATAT
>RHE_CH02872(sahR) Score=7.1 Pos=-33 [Rhizobium etli CFN 42]
ACATAAAGATATCTTTATAT
>RHE_CH02901(metH) Score=6.9 Pos=-18 [Rhizobium etli CFN 42]
ACATAAAGATATCTTTATGT
>RHE_CH00370(metK) Score=6.6 Pos=-94 [Rhizobium etli CFN 42]
ATATAAAGATATATTTATGT
# TF - Zur: RHE_CH02709
>RHE_CH02711(znuC2) Score=5.4 Pos=-81 [Rhizobium etli CFN 42]
CGAGTGTTATGTTATTACATTGA
>RHE_PF00158(zinT) Score=5.4 Pos=-74 [Rhizobium etli CFN 42]
GTAATGTTATTACATTACGGACT
>RHE_CH00969(znuC) Score=5.4 Pos=-174 [Rhizobium etli CFN 42]
TAATCGTTATAACATAACAGTAA
>RHE_CH03625(yciC) Score=5.3 Pos=-122 [Rhizobium etli CFN 42]
GCAATGTGATCTTATAACATATA
>RHE_CH02712(znuA2) Score=5.5 Pos=-43 [Rhizobium etli CFN 42]
TCAATGTAATAACATAACACTCG
>RHE_CH02713(yciC2) Score=6 Pos=-39 [Rhizobium etli CFN 42]
GACATGTAATGATATAACATTAA
# TF - NnrR: RHE_PF00527
>RHE_PF00520(PF00034) Score=4.3 Pos=-114 [Rhizobium etli CFN 42]
ATTTGTCCGCTGTCAAAG
>RHE_PF00525(nirK) Score=4.7 Pos=-148 [Rhizobium etli CFN 42]
CGTTGAGATTACGCAAAG
>RHE_PF00525(nirK) Score=5.2 Pos=-117 [Rhizobium etli CFN 42]
CTTTGTGCCGGCACAAAC
>RHE_PF00525(nirK) Score=5.1 Pos=-94 [Rhizobium etli CFN 42]
GTTTGCGCCACGTCAAAG
>RHE_PF00524(nnrS) Score=5.1 Pos=-125 [Rhizobium etli CFN 42]
CTTTGACGTGGCGCAAAC
>RHE_PF00524(nnrS) Score=5.2 Pos=-102 [Rhizobium etli CFN 42]
GTTTGTGCCGGCACAAAG
>RHE_PF00524(nnrS) Score=4.7 Pos=-71 [Rhizobium etli CFN 42]
CTTTGCGTAATCTCAACG
>RHE_PF00514(norE) Score=5 Pos=-60 [Rhizobium etli CFN 42]
CTTTGCGATCGGTCAAAG
>RHE_PF00515(norC) Score=4.7 Pos=-112 [Rhizobium etli CFN 42]
CTTTGCGAATTAACAAAG
# TF - HutC: RHE_PE00076, RHE_PE00075
>RHE_PE00074(hutF) Score=5.6 Pos=-96 [Rhizobium etli CFN 42]
AACATGTATATACATAAT
>RHE_PE00073(hutI) Score=5.6 Pos=-44 [Rhizobium etli CFN 42]
ATTATGTATATACATGTT
# TF - HypR: RHE_PC00043
>RHE_PC00042(hypD) Score=4.6 Pos=-51 [Rhizobium etli CFN 42]
TCTTGTCGACAGTT
>RHE_PC00043(hypR) Score=4.6 Pos=-93 [Rhizobium etli CFN 42]
AACTGTCGACAAGA
# TF - RirA: RHE_CH00735
>RHE_PF00462(fecI) Score=4.2 Pos=-134 [Rhizobium etli CFN 42]
CTTGACTCCTGTTATCACC
>RHE_PF00469(fhuA2) Score=4.3 Pos=-84 [Rhizobium etli CFN 42]
GCTGACAAAAATAATCACC
>RHE_CH03076(shmR) Score=4.1 Pos=-179 [Rhizobium etli CFN 42]
CTTGATGGATTTGTTCAAG
>RHE_CH03076(shmR) Score=5.1 Pos=-143 [Rhizobium etli CFN 42]
GTTGACAACAGAAGTCATG
>RHE_PF00463(vbsC) Score=4.2 Pos=-49 [Rhizobium etli CFN 42]
GGTGATAACAGGAGTCAAG
>RHE_CH03266 Score=4.8 Pos=-118 [Rhizobium etli CFN 42]
CTTGACTTTCTTACTCATA
>RHE_CH03264(PF10087) Score=4 Pos=-107 [Rhizobium etli CFN 42]
TATGATCAAAACAGTCTAC
>RHE_CH03264(PF10087) Score=4.2 Pos=-82 [Rhizobium etli CFN 42]
CTTTACTCTAAAAATCAAG
>RHE_CH03267(hmuP) Score=4.8 Pos=-78 [Rhizobium etli CFN 42]
TATGAGTAAGAAAGTCAAG
>RHE_CH00735(rirA) Score=3.8 Pos=-87 [Rhizobium etli CFN 42]
GCTGAATGCGAATTTCATA
>RHE_PF00269(eitA) Score=4.1 Pos=-35 [Rhizobium etli CFN 42]
GTTGATAAATTTGGTCTTG
>RHE_CH02695(PF04773) Score=4.4 Pos=-55 [Rhizobium etli CFN 42]
CTTGACTTTTTCACTCTAC
>RHE_PE00160(PF00501) Score=5.2 Pos=-11 [Rhizobium etli CFN 42]
GTTGACTGCTATTGTCAAG
>RHE_CH02254(sufS2) Score=4.7 Pos=-238 [Rhizobium etli CFN 42]
CTTGACTAACGTTGTCAGC
>RHE_CH04056(fbpA) Score=4.8 Pos=-68 [Rhizobium etli CFN 42]
CTTGAAATAGGTAGTCAAG
>RHE_CH04056(fbpA) Score=4.1 Pos=-118 [Rhizobium etli CFN 42]
TTTGAAATATCAGGTCAAG
>RHE_PF00459(vbsA) Score=4.1 Pos=-126 [Rhizobium etli CFN 42]
GATGAGAATTTTTTTCTTC
>RHE_PF00457(vbsS) Score=4.1 Pos=-324 [Rhizobium etli CFN 42]
GAAGAAAAAAATTCTCATC
>RHE_CH02383(fumC) Score=4.1 Pos=-119 [Rhizobium etli CFN 42]
CATGACTGTGATCATCAAT
# TF - Irr: RHE_CH00106
>RHE_CH00304(iprA) Score=5.6 Pos=-99 [Rhizobium etli CFN 42]
ATCTTAAAATTATTCCAAACT
>RHE_CH00381(fssA) Score=5.4 Pos=-57 [Rhizobium etli CFN 42]
TCTTTTGAAGAATTCTAAAGA
>RHE_CH00257(mbfA) Score=6.4 Pos=-34 [Rhizobium etli CFN 42]
GGTTTAGAATTATTCTAAATT
>RHE_CH03846(hemA) Score=5.2 Pos=-118 [Rhizobium etli CFN 42]
TGTCTGGAATCATTCAAAAAA
>RHE_CH00735(rirA) Score=6.1 Pos=-69 [Rhizobium etli CFN 42]
ATTTTGGAATTGTTCAAAACT
>RHE_CH02385(fumA) Score=4.6 Pos=-156 [Rhizobium etli CFN 42]
CATTTAGATCGGTTCCAATTT
>RHE_CH02254(sufS2) Score=6.6 Pos=-206 [Rhizobium etli CFN 42]
AGTTTAGAACAATTCGAAACT
# TF - NagQ: RHE_CH02900
>RHE_CH02899(nagK) Score=-0.9 Pos=-186 [Rhizobium etli CFN 42]
AAGGCCAAAAAAATACCA
# TF - NtrC: RHE_CH01948
>RHE_PF00452(nrtA) Score=4.1 Pos=-289 [Rhizobium etli CFN 42]
CGCACAAATGATAATCA
>RHE_PF00452(nrtA) Score=4.6 Pos=-261 [Rhizobium etli CFN 42]
TGCATATTAAATAATCA
>RHE_CH01783(narK) Score=3.8 Pos=-207 [Rhizobium etli CFN 42]
CGAACAAATTCTCAGCA
>RHE_CH03974(glnK) Score=4.4 Pos=-200 [Rhizobium etli CFN 42]
TGCGCATTATTTGTGCG
>RHE_PE00123(uctA) Score=4.7 Pos=-299 [Rhizobium etli CFN 42]
TGCTCAAAAATTTAGCA
>RHE_CH01946(nifR3) Score=3.8 Pos=-88 [Rhizobium etli CFN 42]
TGGCTAAAAATAATGCA
>RHE_CH02103(glnB) Score=3.8 Pos=-287 [Rhizobium etli CFN 42]
AGACCCAAATTTGTGCA
>RHE_CH02103(glnB) Score=4.4 Pos=-268 [Rhizobium etli CFN 42]
TGCTTATCTTTTAATCA
# TF - Mur: RHE_CH00378
>RHE_CH00878(mntH) Score=5.7 Pos=-68 [Rhizobium etli CFN 42]
GTTGCGAATGACTTGCATT
# TF - ModE: RHE_CH04074
>RHE_CH04071(modA) Score=5.6 Pos=-42 [Rhizobium etli CFN 42]
GTTATATTCCTTGAAATATTTC
>RHE_CH04071(modA) Score=5.4 Pos=-85 [Rhizobium etli CFN 42]
GTTATATTTTCTTCGATACATC
# TF - LexA: RHE_CH01928
>RHE_CH04085(imuA) Score=1.2 Pos=-37 [Rhizobium etli CFN 42]
GAACATAACAGGAAC
>RHE_CH02107(uvrA) Score=5.6 Pos=-139 [Rhizobium etli CFN 42]
GTTCTTTATTTGTTC
>RHE_CH00869(PF04055) Score=5.1 Pos=-85 [Rhizobium etli CFN 42]
GTTCTTGCATTGTTC
>RHE_CH03478(ruvC) Score=5.4 Pos=-59 [Rhizobium etli CFN 42]
GTTTTTGTTTTGTTC
>RHE_CH00323(yifB) Score=5 Pos=-94 [Rhizobium etli CFN 42]
GTTCTTGTTTTATTC
>RHE_CH01928(lexA) Score=5.2 Pos=-84 [Rhizobium etli CFN 42]
GTTCTGGATTTGTTT
>RHE_CH00573(uvrD2) Score=1.5 Pos=-63 [Rhizobium etli CFN 42]
GAACATTCAAGGAAC
>RHE_CH02819(uvrD) Score=0 Pos=-109 [Rhizobium etli CFN 42]
GAATGAAAGCAGAAC
>RHE_CH00410(rmuC) Score=5 Pos=-235 [Rhizobium etli CFN 42]
GTTCACGTTTTGATC
>RHE_CH04022(mgpS) Score=0.9 Pos=-244 [Rhizobium etli CFN 42]
GAACAAAAGCTGAAT
>RHE_CH01627(dnaE) Score=1.1 Pos=-253 [Rhizobium etli CFN 42]
GAACAAACATGGAAC
>RHE_PF00150(imuA) Score=0.8 Pos=-59 [Rhizobium etli CFN 42]
GAACAAATAAAGAAC
>RHE_CH02323(recA) Score=0.7 Pos=-62 [Rhizobium etli CFN 42]
GAACAAATGGGGTAC
>RHE_CH02323(recA) Score=0.4 Pos=-130 [Rhizobium etli CFN 42]
AAACAAATGTAGAAC
>RHE_CH02969(greA) Score=4.9 Pos=-246 [Rhizobium etli CFN 42]
GTTCACTATATGTTC
>RHE_CH02563(uvrB) Score=4.5 Pos=-162 [Rhizobium etli CFN 42]
GTTTCCCTTTTGTAC
>RHE_CH02874(rna) Score=4.9 Pos=-31 [Rhizobium etli CFN 42]
GTTCCTGCATTGTTC
>RHE_CH01629(dinP) Score=5 Pos=-20 [Rhizobium etli CFN 42]
GTTCAACCTTTGTTC
>RHE_CH02108(ssb) Score=0.8 Pos=-160 [Rhizobium etli CFN 42]
GAACAAATAAAGAAC
# TF - LiuR: RHE_CH02217
>RHE_CH00905(acdH2) Score=6.4 Pos=-83 [Rhizobium etli CFN 42]
ATTGACGTTTACGTAAAA
>RHE_CH00557(acdH) Score=6.1 Pos=-87 [Rhizobium etli CFN 42]
TCTGACGTTTACGCAAAC
>RHE_CH03891(mdh) Score=6 Pos=-156 [Rhizobium etli CFN 42]
TCTTACGTTTACGTAAGA
>RHE_CH02217(liuR1) Score=5.2 Pos=-53 [Rhizobium etli CFN 42]
ATTGACTATTACGTAAAA
>RHE_CH01308(etfD) Score=5.9 Pos=-158 [Rhizobium etli CFN 42]
ATTGACGTTAACGTAAGC
>RHE_CH00478(fadD) Score=5.9 Pos=-159 [Rhizobium etli CFN 42]
GTTGACGTTTACGTCAAG
>RHE_CH01182(SMc00041) Score=5.7 Pos=-35 [Rhizobium etli CFN 42]
GTTGACGTTAACGTCAAA
>RHE_CH01182(SMc00041) Score=4.5 Pos=-41 [Rhizobium etli CFN 42]
AATAACGTTGACGTTAAC
>RHE_CH00505(PF03060) Score=5.8 Pos=-37 [Rhizobium etli CFN 42]
ATTGACGTTTTCGTAAAC
>RHE_CH03792(etfB) Score=5.9 Pos=-177 [Rhizobium etli CFN 42]
GTTGACGTATACGTAAAC
# TF - XylR: RHE_CH03171
>RHE_CH03172(xylF) Score=4.9 Pos=-104 [Rhizobium etli CFN 42]
AATTTCTCGACTGTCGAGAAAAT
>RHE_CH03171(xylR) Score=4.9 Pos=-244 [Rhizobium etli CFN 42]
ATTTTCTCGACAGTCGAGAAATT
# TF - RutR: RHE_CH03289
>RHE_CH00187(pntD) Score=4.8 Pos=-154 [Rhizobium etli CFN 42]
TCTTTACCGCCTGAAAAATT
>RHE_CH03289(rutR) Score=5.9 Pos=-163 [Rhizobium etli CFN 42]
ATTTGACCGATTGGTAAACA
>RHE_CH03277(pydX) Score=5.6 Pos=-77 [Rhizobium etli CFN 42]
ATTTTACCGTTTGATAAATT
>RHE_PB00102(pytM) Score=5.2 Pos=-32 [Rhizobium etli CFN 42]
TTTGAACCAGATGGTAAAAA
>RHE_CH03290(pydC) Score=5.6 Pos=-156 [Rhizobium etli CFN 42]
TGTTTACCAATCGGTCAAAT
# TF - PhnF: RHE_CH00168
>RHE_CH00167(phnG) Score=6.4 Pos=-35 [Rhizobium etli CFN 42]
TTGTCTATATCAATAGACAT
>RHE_CH00168(phnF) Score=6.4 Pos=-94 [Rhizobium etli CFN 42]
ATGTCTATTGATATAGACAA
# TF - EutR: RHE_CH02889
>RHE_CH02888(eutA) Score=5.9 Pos=-169 [Rhizobium etli CFN 42]
CATGAAAAGAAATTTTCAGA
>RHE_CH02888(eutA) Score=5.3 Pos=-127 [Rhizobium etli CFN 42]
CCTGAAGAATTCTTTTCTTA
>RHE_CH02889(eutR) Score=5.9 Pos=-32 [Rhizobium etli CFN 42]
TCTGAAAATTTCTTTTCATG
>RHE_CH02889(eutR) Score=5.3 Pos=-74 [Rhizobium etli CFN 42]
TAAGAAAAGAATTCTTCAGG
# RNA - Cobalamin
>RHE_CH02368(bluB) Score=100.9 Pos=-229 [Rhizobium etli CFN 42]
TGAAATAGATACCTCGTCAGGTGCCCGCTTTCACGCGGGAGAATCGGGAATCCGGTGCAAGACCGGAACGTGCCCAACGCTGTAAGGCCGACGCCCGCCGCTTCATCATGCCACTGGGTTTTGCCGGGAAGGCTGCGGCAGACGGATGACGCCAAGTCAGAAGACCGGCCTGGCAAGATAGACCCAAC
>RHE_CH03718(nrdH) Score=116.9 Pos=-485 [Rhizobium etli CFN 42]
TACTATATCTAGTGTTCAAGGTTCCTTCGATTCGTCAGGATCGCGGGCGAAGATGGGAATACGGTGCGTTTCGCCATGACGGCGCAACAAGGCCGGAGCTGCCCCCGCAACTGTAAGCGGCGAGCAACTGTCCGATTTCAGGTCACTGAGGCATGATGCCTCGGGAAGGCTGGGGCAGGGTGCTTCGACCCGCGAGCCAGGAGACCTGCCTTGAACTAGATGTCCACG
# RNA - mini-ykkC
>RHE_PE00120(amt1) Score=34.7 Pos=-70 [Rhizobium etli CFN 42]
CCGACCGGGACGGCCCGGTCGCTTCCCTGGGGCACAGCCGGGACGACCTGG
>RHE_CH02230(ykkc) Score=22.5 Pos=-74 [Rhizobium etli CFN 42]
ATCGCAGACGACTGCGGCGTCCGGAGGATGCAACTGTCGCGGGGACGGCCTCGCT
# RNA - FMN
>RHE_CH02688(ribH2) Score=117.1 Pos=-221 [Rhizobium etli CFN 42]
GCCGTTCTCAGGGCGGGGTGAAAGTCCCTACCGGCGGTATGCAGTTTCGATTGCGAGCCCGCGAGCGCCTTCCTCGGAAGGGTCAGCAGATCAGGTGAGATGCCTGAGCCGACGGTCATAGTCCGGATGAAAGAGAACGTGCGC
>RHE_CH01591(ribN) Score=112.4 Pos=-299 [Rhizobium etli CFN 42]
GCTGTTCTCAGGGCGGGGTGAAAGTCCCCACCGGCGGTAAGGGCTGCGGCCCGAGCCCGCGAGCGCCTTCTCAAGCTTCGCCCGGAGAGGGGTCAGCAGATCCGGTGCGATTCCGGAGCCGACGGTATAGTCCGGATGAAAGAGAATGAGCAT
# RNA - TPP
>RHE_PB00082(thiC) Score=66.5 Pos=-228 [Rhizobium etli CFN 42]
GACCATTCACCAGGGGTGCCCCGGCAAGGGGCTGAGATTCTGCTGAACAATACGGCTTTGCCTGTTGTGGCGCGGTGACCCGTTGAACCTGATCCAGTTCATACTGGCGTAGGGACGGTGCGGACGCTGCGGC
>RHE_CH03864(thiX) Score=58.4 Pos=-273 [Rhizobium etli CFN 42]
CGAAATAACAGGGGAGCTCCGTGTCGCCGGGGCTGAGATGCGAGGCGCAGGCCTCCGAACCCTTCTAAGCTGATCTGGGTAATGCCAGCGGAGCGAGGTCCAAATGTATTTCGGC
>RHE_PE00337(thiM) Score=54 Pos=-165 [Rhizobium etli CFN 42]
CGATGAGAGACAGGGGCGTTCGTCGACAGACGGGCTGAGAAGCACCCTTCGAACCTGAACCGGATAATGCCGGCGGAGGGAGTCGCTCGGGGCATCGC
# RNA - serC
>RHE_CH03455(serC) Score=65.1 Pos=-53 [Rhizobium etli CFN 42]
GCGGCGGGACACCCTTCCCCAACGAAGGGCTTTCTATCTGAGAGGATAGCATTA
# RNA - Glycine
>RHE_CH02241(gcvT) Score=53.7 Pos=-249 [Rhizobium etli CFN 42]
CAACCCTGTTGGGAGAATCCGGTGCTTTCGCCACCGGTGCCGAAGGAGCAACCGCCCCGGAAACTCTCAGGCCAAAGGACCAGCAAGGGG
>RHE_CH02241(gcvT) Score=47.4 Pos=-157 [Rhizobium etli CFN 42]
GACGGAACTCTGGAGAGAAGCGTTCTCGAAACGCTCGCCGAAGGGATAACAATCTCAGGCGTCAAGGACAGAGGGGGCTCAGA
# RNA - SAM_alpha
>RHE_CH04033(metA) Score=79.2 Pos=-191 [Rhizobium etli CFN 42]
AGGCACTCCGTGGTGATTTGGCCGGCCGGCTTGCAGCCACGTTAAAAAAGTCGCTAAAGGGCCGCGTGCGGACCGGTAG
>RHE_CH00522(metY) Score=80.9 Pos=-122 [Rhizobium etli CFN 42]
AGAATTATCCCGTGGTGATTTGGCCGGTCGGCTTGCAGCCACGTTAAACAAGTGGCTAAAAAGACCGGGTTGAAACCGGT
# RNA - ykkC-yxkD
>RHE_PE00123(uctB) Score=88.1 Pos=-187 [Rhizobium etli CFN 42]
CTGAGTTGGTGGCTAGGGTTCCGGCGTTTTTCTGAAGCGCGACTGGTCCGAGAGCCACCACCGGCGGAGGAGAAAACCCGTCGGGTGCACGGCGGGACAAAAGCCCGGGAGAC
# RNA - ybhL
>RHE_CH03940(ybhL) Score=68 Pos=-80 [Rhizobium etli CFN 42]
AGGCATGCTGGAGCTCCGCAGCGGCGCCCGGGTCGAGAACCCCGACACCGTATCTCCTTCGGAGCTTGTAA
# TF - RhaR: RHE_PE00290
>RHE_PE00290(rhaR) Score=6.7 Pos=-64 [Rhizobium etli CFN 42]
ATGATCG---ATGATTG
>RHE_PE00290(rhaR) Score=6.4 Pos=-105 [Rhizobium etli CFN 42]
ACGATCA---TCGATTA
>RHE_PE00290(rhaR) Score=6.4 Pos=-115 [Rhizobium etli CFN 42]
TCAATCG---ACGATCA
>RHE_PE00291(rhaEW) Score=6.6 Pos=-101 [Rhizobium etli CFN 42]
TTGATCG---TCGATTG
>RHE_PE00291(rhaEW) Score=6.4 Pos=-152 [Rhizobium etli CFN 42]
TCAATCA---ACGATCA
>RHE_PE00291(rhaEW) Score=6.6 Pos=-111 [Rhizobium etli CFN 42]
ATAATCG---TTGATCG
# TF - NifA: RHE_PD00228
>RHE_PD00215(cpxA) Score=4.8 Pos=-193 [Rhizobium etli CFN 42]
TGTTAGATACGCGACA
>RHE_PD00224(fixB) Score=4.6 Pos=-156 [Rhizobium etli CFN 42]
TGTCGGGAAGCTTACA
>RHE_PD00229(nifB) Score=4.8 Pos=-139 [Rhizobium etli CFN 42]
TGTCGGAAGCTTGACA
>RHE_PD00259(nifQ) Score=3.7 Pos=-176 [Rhizobium etli CFN 42]
TGTCCGTTTGGCGATA
>RHE_PD00260(nifH) Score=3.9 Pos=-190 [Rhizobium etli CFN 42]
TGGCGGTTTCGAGACA
>RHE_PD00217(ahpC1) Score=3.7 Pos=-407 [Rhizobium etli CFN 42]
TGTCGGACCTCAAACT
>RHE_PD00308(nifH) Score=4 Pos=-138 [Rhizobium etli CFN 42]
TTTCTGAAACCCAACA
>RHE_PD00308(nifH) Score=5 Pos=-195 [Rhizobium etli CFN 42]
TGTCTGATCGGCGACA
>RHE_PD00202(nifH) Score=5 Pos=-195 [Rhizobium etli CFN 42]
TGTCTGATCGGCGACA
>RHE_PD00202(nifH) Score=4 Pos=-138 [Rhizobium etli CFN 42]
TTTCTGAAACCCAACA
# TF - AglR: RHE_CH00695
>RHE_CH00695(aglR) Score=6.4 Pos=-244 [Rhizobium etli CFN 42]
ATTTCAAAGCGCTTTGACAC
>RHE_CH00695(aglR) Score=5.7 Pos=-81 [Rhizobium etli CFN 42]
AATTAAAAGCGCTTTGAGCG
>RHE_CH00696(aglE) Score=5.7 Pos=-236 [Rhizobium etli CFN 42]
CGCTCAAAGCGCTTTTAATT
>RHE_CH00696(aglE) Score=6.4 Pos=-73 [Rhizobium etli CFN 42]
GTGTCAAAGCGCTTTGAAAT
# TF - ThuR: RHE_PF00211
>RHE_PF00210(thuE) Score=6.7 Pos=-194 [Rhizobium etli CFN 42]
AATTGAAATCGATTTCAATT
>RHE_PF00210(thuE) Score=5.6 Pos=-34 [Rhizobium etli CFN 42]
TGTCCAAATCGATTTCAATT
>RHE_PF00211(thuR) Score=5.6 Pos=-257 [Rhizobium etli CFN 42]
AATTGAAATCGATTTGGACA
>RHE_PF00211(thuR) Score=6.7 Pos=-97 [Rhizobium etli CFN 42]
AATTGAAATCGATTTCAATT
>RHE_CH03256(thuA2) Score=5.7 Pos=-67 [Rhizobium etli CFN 42]
TTTCCAAAGCGCTTTGAATT
# TF - RL3595
>RHE_CH03149(PF00701) Score=6.9 Pos=-73 [Rhizobium etli CFN 42]
TAGTGGGAACGTTCCCAATA
>RHE_CH03150(RL3595) Score=6.9 Pos=-108 [Rhizobium etli CFN 42]
TATTGGGAACGTTCCCACTA
# TF - PckR: RHE_CH03622
>RHE_CH03500(fba) Score=5.2 Pos=-128 [Rhizobium etli CFN 42]
CCTTTCAAACGATTGAATTG
>RHE_CH03500(fba) Score=5 Pos=-109 [Rhizobium etli CFN 42]
GATTTCAATCGTTTCAATGA
>RHE_CH00037(pckA) Score=5.4 Pos=-128 [Rhizobium etli CFN 42]
AATTTAAATCGATTAATTAT
>RHE_CH03891(mdh) Score=5 Pos=-132 [Rhizobium etli CFN 42]
GCATCTAAACGATTGAAAAT
>RHE_CH00037(pckA) Score=5.2 Pos=-158 [Rhizobium etli CFN 42]
CTCTTCAAACGATTTAAAAA
>RHE_CH00704(zwf) Score=5.5 Pos=-57 [Rhizobium etli CFN 42]
TTTTTAAATCGATTAGATTA
>RHE_CH00173(mgsA) Score=5.3 Pos=-40 [Rhizobium etli CFN 42]
CGATCAAATCGATTGAATTG
>RHE_CH03897(sdhC) Score=4.6 Pos=-169 [Rhizobium etli CFN 42]
AACCCGAATCGATTAAATTA
>RHE_CH03622(pckR) Score=4 Pos=-65 [Rhizobium etli CFN 42]
TGGTTAAATCTTTTAATTAA
>RHE_CH03635(eda) Score=4.8 Pos=-32 [Rhizobium etli CFN 42]
AATTTCAATCGTTTCAAGGA
>RHE_CH03544(COG3931) Score=4.5 Pos=-137 [Rhizobium etli CFN 42]
AATGCTAATCGATTATATTT
>RHE_CH03543(COG5480) Score=4.5 Pos=-81 [Rhizobium etli CFN 42]
AAATATAATCGATTAGCATT
>RHE_CH00475(scrK) Score=4.7 Pos=-47 [Rhizobium etli CFN 42]
TCGCTTAATCGATTGAAGAA
# TF - HrcA: RHE_CH00364
>RHE_CH00829(groS) Score=6.9 Pos=-85 [Rhizobium etli CFN 42]
CTAGCACTCACCGCAAGGGAGTGCTAA
>RHE_CH01270(groS) Score=6.1 Pos=-81 [Rhizobium etli CFN 42]
TTGGCACTCCTATCAATCGAGTGCCAC
>RHE_PF00329(groS) Score=6.8 Pos=-169 [Rhizobium etli CFN 42]
TTAGCAGTCGTCGATAGAGAGTGCTAA
>RHE_CH01238(groS) Score=6 Pos=-177 [Rhizobium etli CFN 42]
TTAGCAGCCACTTCGAGTGAGTGCTAA
# TF - SocR: RHE_PF00256
>RHE_PF00256(socR) Score=5.4 Pos=-96 [Rhizobium etli CFN 42]
CAATGATACCGGTCTCCAAT
>RHE_PF00256(socR) Score=6 Pos=-75 [Rhizobium etli CFN 42]
AAAAGAGACCGGTCTCACGA
>RHE_PF00255(socA) Score=5.4 Pos=-105 [Rhizobium etli CFN 42]
ATTGGAGACCGGTATCATTG
>RHE_PF00255(socA) Score=6 Pos=-126 [Rhizobium etli CFN 42]
TCGTGAGACCGGTCTCTTTT
# TF - RhiR: RHE_PF00288
>RHE_PF00297(rhiL) Score=5.9 Pos=-171 [Rhizobium etli CFN 42]
GCATGAAAATCTTTTCATTC
>RHE_PF00297(rhiL) Score=6.2 Pos=-30 [Rhizobium etli CFN 42]
TGATGAAAATGTTTTCATGG
>RHE_PF00296(rhiX) Score=6.2 Pos=-214 [Rhizobium etli CFN 42]
CCATGAAAACATTTTCATCA
>RHE_PF00296(rhiX) Score=5.9 Pos=-73 [Rhizobium etli CFN 42]
GAATGAAAAGATTTTCATGC
# TF - SMb20537: RHE_CH00074
>RHE_CH00074(SMb20537) Score=5.4 Pos=-37 [Rhizobium etli CFN 42]
GTATTGCAAATTTGCGCTAT
>RHE_CH00073(SMb20538) Score=5.4 Pos=-129 [Rhizobium etli CFN 42]
ATAGCGCAAATTTGCAATAC
# TF - SMb20667: RHE_PF00344
>RHE_PF00344(SMb20667) Score=6.6 Pos=-310 [Rhizobium etli CFN 42]
TTTTGGCAGCGCTGCCATTC
>RHE_PF00344(SMb20667) Score=6.6 Pos=-256 [Rhizobium etli CFN 42]
AAATGGCAGCGCTGCCAAAA
>RHE_PF00345(ygbJ) Score=6.6 Pos=-99 [Rhizobium etli CFN 42]
TTTTGGCAGCGCTGCCATTT
>RHE_PF00345(ygbJ) Score=6.6 Pos=-45 [Rhizobium etli CFN 42]
GAATGGCAGCGCTGCCAAAA
# TF - MocR: RHE_PE00447
>RHE_PE00446(mocD) Score=5.8 Pos=-81 [Rhizobium etli CFN 42]
TTTGATAGATTACATCAAG
>RHE_PE00447(mocR) Score=5.8 Pos=-67 [Rhizobium etli CFN 42]
CTTGATGTAATCTATCAAA
# TF - SmoR: RHE_PC00216
>RHE_PC00220(fruK) Score=5.5 Pos=-289 [Rhizobium etli CFN 42]
AAAATTACATGCGTAAACTT
>RHE_PC00220(fruK) Score=5.6 Pos=-114 [Rhizobium etli CFN 42]
AAATTGTCACGCGTCAAATT
# TF - SoxR: RHE_CH03863
>RHE_CH02961(PF03992) Score=6 Pos=-60 [Rhizobium etli CFN 42]
ACCTCAACCATAGTTGAGGA
>RHE_CH03863(soxR) Score=6 Pos=-29 [Rhizobium etli CFN 42]
ACCTCAACTAATATTGAGGT
# TF - CueR: RHE_PE00006
>RHE_PE00007(copA) Score=5.7 Pos=-63 [Rhizobium etli CFN 42]
ACCTTCCAGTTGCTGGAAGGT
# TF - CadR-PbrR: RHE_CH03720
>RHE_CH03719(cadA) Score=6.3 Pos=-58 [Rhizobium etli CFN 42]
CACCTCTAGTCGCTAGAGGAT
# TF - AduR: RHE_CH03414
>RHE_CH03414(aduR) Score=7.2 Pos=-32 [Rhizobium etli CFN 42]
CTGATTAAACGATTAATCAG
# TF - SMb21598: RHE_PB00118
>RHE_PB00117(COG0673) Score=6.4 Pos=-99 [Rhizobium etli CFN 42]
AGTCGTAAACGTTTACGGAG
>RHE_PB00118(SMb21598) Score=6.7 Pos=-91 [Rhizobium etli CFN 42]
CTCCGTAAACGTTTACGACT
# TF - SMb21706: RHE_CH03845
>RHE_CH03845(SMb21706) Score=6.2 Pos=-150 [Rhizobium etli CFN 42]
TTGGTAAAAGCTTTTCTCAA
>RHE_CH03845(SMb21706) Score=6.6 Pos=-182 [Rhizobium etli CFN 42]
ATGAGAAAACCTTTTCTCAC
# TF - SMc04260: RHE_CH02462
>RHE_CH02461(SMc04259) Score=5.4 Pos=-33 [Rhizobium etli CFN 42]
TTCCGGCAACGTTTCAGTGA
>RHE_CH03640(bglSch) Score=5.9 Pos=-108 [Rhizobium etli CFN 42]
CTACTGTAACGTTGCAGTTT
# TF - RL4253 : RHE_CH03710
>RHE_CH03709(RL4252) Score=5.8 Pos=-123 [Rhizobium etli CFN 42]
GGCTTATAACGTTTTAAATT
>RHE_CH03710(RL4253) Score=6.1 Pos=-81 [Rhizobium etli CFN 42]
AATTTAAAACGTTTTCATTG
>RHE_CH03709(RL4252) Score=6.1 Pos=-244 [Rhizobium etli CFN 42]
CAATGAAAACGTTTTAAATT
>RHE_CH03710(RL4253) Score=5.8 Pos=-202 [Rhizobium etli CFN 42]
AATTTAAAACGTTATAAGCC
# TF - SMb20717: RHE_CH03647
>RHE_CH03646(SMb20718) Score=6.1 Pos=-158 [Rhizobium etli CFN 42]
CGATGTAAAGGTTTACATGA
>RHE_CH03646(SMb20718) Score=6.1 Pos=-179 [Rhizobium etli CFN 42]
CGATGTAAACCTTTACATGC
>RHE_CH03647(SMb20717) Score=6.1 Pos=-131 [Rhizobium etli CFN 42]
TCATGTAAACCTTTACATCG
>RHE_CH03647(SMb20717) Score=6.1 Pos=-110 [Rhizobium etli CFN 42]
GCATGTAAAGGTTTACATCG
# TF - AnsR: RHE_PE00347, RHE_PE00348
>RHE_PE00349(ansP) Score=4.3 Pos=-88 [Rhizobium etli CFN 42]
ACCTATCAGACCGCA
>RHE_CH03876(dapA) Score=4.9 Pos=-31 [Rhizobium etli CFN 42]
ATCTGTTCGACAGCT
# TF - IolR: RHE_CH02362
>RHE_CH02362(iolR) Score=6.5 Pos=-114 [Rhizobium etli CFN 42]
GTTTGCTACCGGGTGCAAAC
>RHE_CH02362(iolR) Score=6.3 Pos=-135 [Rhizobium etli CFN 42]
GATTGCTACCGGGTGCAAAA
>RHE_CH02361(iolK) Score=6.5 Pos=-84 [Rhizobium etli CFN 42]
GTTTGCACCCGGTAGCAAAC
>RHE_CH02361(iolK) Score=6.3 Pos=-63 [Rhizobium etli CFN 42]
TTTTGCACCCGGTAGCAATC
# TF - AfrR: RHE_CH01719
>RHE_CH01719(afrR) Score=5.2 Pos=-153 [Rhizobium etli CFN 42]
GATTTAAATCGTTCCAAAAG
>RHE_CH01719(afrR) Score=6 Pos=-57 [Rhizobium etli CFN 42]
TTTTTGGAACGTTCCAAATA
# TF - IdnR: RHE_PC00141
>RHE_PC00143(COG1063) Score=6.8 Pos=-98 [Rhizobium etli CFN 42]
ATATGTTATCGATAACATAA
>RHE_PC00144(idnO) Score=6.8 Pos=-105 [Rhizobium etli CFN 42]
TTATGTTATCGATAACATAT
>RHE_PC00141(idnR) Score=6.1 Pos=-226 [Rhizobium etli CFN 42]
ATTTGTTATCGATATCATCC
>RHE_PC00141(idnR) Score=4.9 Pos=-131 [Rhizobium etli CFN 42]
CGATGATAGCGATAACTTTA
>RHE_PC00140(gnl) Score=6.1 Pos=-37 [Rhizobium etli CFN 42]
GGATGATATCGATAACAAAT
>RHE_PC00140(gnl) Score=4.9 Pos=-132 [Rhizobium etli CFN 42]
TAAAGTTATCGCTATCATCG
>RHE_PC00147 Score=6.8 Pos=-57 [Rhizobium etli CFN 42]
GAATGTTATCGATAACATAT
# TF - XylR: RHE_CH03650
>RHE_CH02453(xynA) Score=6.4 Pos=-41 [Rhizobium etli CFN 42]
TTTGATGTACGTACCTCAAC
>RHE_CH01398(COG5001) Score=5.9 Pos=-63 [Rhizobium etli CFN 42]
TTTGAGGTACGTCCATCAGA
>RHE_CH03650(xylR) Score=6.6 Pos=-51 [Rhizobium etli CFN 42]
TTTGATTTACGTACATCAAA
# TF - Mll1683: RHE_CH01786
>RHE_CH01786(mll1683) Score=5.1 Pos=-84 [Rhizobium etli CFN 42]
ATTTGCTAGCGCTATCAACT
>RHE_CH01786(mll1683) Score=4.8 Pos=-107 [Rhizobium etli CFN 42]
AGTTGACAGCGCAGTCAAAC
>RHE_CH01787(mll1682) Score=4.8 Pos=-131 [Rhizobium etli CFN 42]
GTTTGACTGCGCTGTCAACT
>RHE_CH01787(mll1682) Score=5.1 Pos=-154 [Rhizobium etli CFN 42]
AGTTGATAGCGCTAGCAAAT
# TF - pRL90265: RHE_PB00134
>RHE_PB00139(pRL90270) Score=5.8 Pos=-152 [Rhizobium etli CFN 42]
TTTTGCACACGTGCTCAAAT
# TF - SMb20039: RHE_CH02666
>RHE_CH02665(COG697) Score=13.6 Pos=-205 [Rhizobium etli CFN 42]
ATCTGTATTGC-(8)-CCATAACAGTT-(6)-AATCGTATCAG
# TF - Mll0059: RHE_CH02284
>RHE_CH03501(phzF) Score=6 Pos=-80 [Rhizobium etli CFN 42]
CATTGTCA---CGACAAGA
>RHE_CH02284(Mll0059) Score=6 Pos=-34 [Rhizobium etli CFN 42]
CAGAGTCA---TGACAATA
>RHE_CH02284(Mll0059) Score=9.2 Pos=-10 [Rhizobium etli CFN 42]
AATTGTCA---TGACAAAT
>RHE_CH02283(PF06568) Score=9.2 Pos=-90 [Rhizobium etli CFN 42]
ATTTGTCA---TGACAATT
>RHE_CH02283(PF06568) Score=6 Pos=-66 [Rhizobium etli CFN 42]
TATTGTCA---TGACTCTG
# TF - UxuR2: RHE_PF00067
>RHE_PF00067(uxuR2) Score=5.7 Pos=-61 [Rhizobium etli CFN 42]
GAATTGGTCAGGCCAGTTG
# TF - MdcY: RHE_CH00919
>RHE_CH00920(matA) Score=4.8 Pos=-125 [Rhizobium etli CFN 42]
GTGTATACAC
>RHE_CH00919(mdcY) Score=4.8 Pos=-43 [Rhizobium etli CFN 42]
GTGTATACAC
# TF - FnrN/FixK/AadR: RHE_PF00508, RHE_PD00216, RHE_CH02479
>RHE_PF00507(ccoN) Score=5.2 Pos=-373 [Rhizobium etli CFN 42]
TTGTTGATGTAGATCAAGGA
>RHE_PF00525(nirK) Score=3.7 Pos=-118 [Rhizobium etli CFN 42]
ACTTTGTGCCGGCACAAACA
>RHE_PF00525(nirK) Score=4.5 Pos=-95 [Rhizobium etli CFN 42]
AGTTTGCGCCACGTCAAAGA
>RHE_PF00503(ccoG) Score=5.3 Pos=-70 [Rhizobium etli CFN 42]
TTCTTGATCTGCATCAAGGA
>RHE_PD00292(ccoG) Score=5.3 Pos=-69 [Rhizobium etli CFN 42]
TTCTTGATCTGCATCAAGGA
>RHE_PD00292(ccoG) Score=5.2 Pos=-209 [Rhizobium etli CFN 42]
AGTTTGATCTGCCTCAAAGA
>RHE_PD00296(ccoN) Score=5.2 Pos=-105 [Rhizobium etli CFN 42]
TTGTTGATGTAGATCAAGGA
>RHE_PD00216(fnrN) Score=5.6 Pos=-145 [Rhizobium etli CFN 42]
GATTTGATCTGGATCAAATC
>RHE_PC00106(adhA) Score=4.2 Pos=-147 [Rhizobium etli CFN 42]
GCTTTGGCCGGCGTCAAGCT
>RHE_PF00489(hemA) Score=4.7 Pos=-238 [Rhizobium etli CFN 42]
TCTTTGATCGAAAGCAATCC
>RHE_PF00489(hemA) Score=5.1 Pos=-69 [Rhizobium etli CFN 42]
AACTTGACGGAGATCAAATA
>RHE_PD00022(osmY) Score=5.2 Pos=-75 [Rhizobium etli CFN 42]
TGCTTGATGAAGATCAACGA
>RHE_CH02479(fnrN) Score=5.5 Pos=-110 [Rhizobium etli CFN 42]
TCTTTGATCTGAATCAAATT
>RHE_CH02479(fnrN) Score=4.6 Pos=-79 [Rhizobium etli CFN 42]
CATTTGATAATCATCAAACT
>RHE_PF00508(fixKf) Score=5.2 Pos=-152 [Rhizobium etli CFN 42]
TCCTTGATCTACATCAACAA
>RHE_PF00498(ccmI) Score=4.8 Pos=-70 [Rhizobium etli CFN 42]
AATTTGACCGGCGTCAATGT
>RHE_PD00216(fnrN) Score=4.6 Pos=-113 [Rhizobium etli CFN 42]
AAATTGATAGCCATCAAAGA
>RHE_CH00952(ctaC) Score=4.1 Pos=-177 [Rhizobium etli CFN 42]
CGTTTGAGCCAACACAATGC
# TF - FixJ: RHE_PF00530
>RHE_PF00508(fixKf) Score=5.9 Pos=-102 [Rhizobium etli CFN 42]
TGTTACACACTGTTACA
>RHE_PD00296(ccoN) Score=5.4 Pos=-152 [Rhizobium etli CFN 42]
TGCAACAGAGTGTAACA
# TF - EutR: RHE_PF00188
>RHE_PF00189(doeX) Score=3.9 Pos=-87 [Rhizobium etli CFN 42]
TGAAAATCAGTTCAAT
>RHE_PF00187(ehuA) Score=3.1 Pos=-88 [Rhizobium etli CFN 42]
ATTGTCATGATATTAT
>RHE_PF00187(ehuA) Score=3.6 Pos=-65 [Rhizobium etli CFN 42]
ATTGACATGATTTTCG
>RHE_PF00188(EutR) Score=3.9 Pos=-30 [Rhizobium etli CFN 42]
ATTGAACTGATTTTCA