Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FnrN/FixK/AadR in Rhizobium etli CFN 42

Properties
Regulator type: Transcription factor
TF locus tag: RHE_PF00508, RHE_PD00216, RHE_CH02479
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FnrN/FixK/AadR - Rhizobiales
Statistics of regulated genes:
- Genes 37
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -177
Score: 4.1
Sequence: CGTTTGAGCCAACACAATGC
Locus tag: RHE_CH00952
Name: ctaC
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: RHE_CH00953
Name: ctaD
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: RHE_CH00954
Name: ctaB
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Locus tag: RHE_CH00955
Name: ctaG
Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: RHE_CH00956
Name: ctaE
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
RHE_CH00952
ctaC
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
RHE_CH00953
ctaD
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
RHE_CH00954
ctaB
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
RHE_CH00955
ctaG
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
RHE_CH00956
ctaE
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -147
Score: 4.2
Sequence: GCTTTGGCCGGCGTCAAGCT
Locus tag: RHE_PC00106
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
RHE_PC00106
adhA
Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Position: -70
Score: 5.3
Sequence: TTCTTGATCTGCATCAAGGA
Locus tag: RHE_PF00503
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: RHE_PF00502
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: RHE_PF00501
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: RHE_PF00500
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Locus tag: RHE_PF00499
Name: null
Funciton: transcriptional regulator, Crp/Fnr family
RHE_PF00503
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
RHE_PF00502
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
RHE_PF00501
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
RHE_PF00500
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
RHE_PF00499
transcriptional regulator, Crp/Fnr family
Position: -209
Score: 5.2
Sequence: AGTTTGATCTGCCTCAAAGA
Position: -69
Score: 5.3
Sequence: TTCTTGATCTGCATCAAGGA
Locus tag: RHE_PD00292
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: RHE_PD00291
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: RHE_PD00290
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: RHE_PD00289
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Locus tag: RHE_PD00288
Name: null
Funciton: transcriptional regulator, Crp/Fnr family
RHE_PD00292
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
RHE_PD00291
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
RHE_PD00290
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
RHE_PD00289
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
RHE_PD00288
transcriptional regulator, Crp/Fnr family
Position: -105
Score: 5.2
Sequence: TTGTTGATGTAGATCAAGGA
Locus tag: RHE_PD00296
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: RHE_PD00295
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: RHE_PD00294
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: RHE_PD00293
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
RHE_PD00296
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
RHE_PD00295
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
RHE_PD00294
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
RHE_PD00293
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -70
Score: 4.8
Sequence: AATTTGACCGGCGTCAATGT
Locus tag: RHE_PF00498
Name: ccmI
Funciton: Cytochrome c heme lyase subunit CcmI
Locus tag: RHE_PF00497
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: RHE_PF00496
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
RHE_PF00498
ccmI
Cytochrome c heme lyase subunit CcmI
RHE_PF00497
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
RHE_PF00496
ccmF
Cytochrome c heme lyase subunit CcmF
Position: -238
Score: 4.7
Sequence: TCTTTGATCGAAAGCAATCC
Position: -69
Score: 5.1
Sequence: AACTTGACGGAGATCAAATA
Locus tag: RHE_PF00489
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
RHE_PF00489
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -75
Score: 5.2
Sequence: TGCTTGATGAAGATCAACGA
Locus tag: RHE_PD00022
Name: osmY
Funciton: Osmotically inducible protein Y precursor
RHE_PD00022
osmY
Osmotically inducible protein Y precursor
Position: -110
Score: 5.5
Sequence: TCTTTGATCTGAATCAAATT
Position: -79
Score: 4.6
Sequence: CATTTGATAATCATCAAACT
Locus tag: RHE_CH02479
Name: fnrN
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
RHE_CH02479
fnrN
Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
Position: -152
Score: 5.2
Sequence: TCCTTGATCTACATCAACAA
Locus tag: RHE_PF00508
Name: fixKf
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family
Locus tag: RHE_PF00509
Name: fixLf
Funciton: Two-component oxygen-sensor histidine kinase FixLf
RHE_PF00508
fixKf
Nitrogen fixation and oxygen response transcriptional regulator FixKf, Crp family
RHE_PF00509
fixLf
Two-component oxygen-sensor histidine kinase FixLf
Position: -145
Score: 5.6
Sequence: GATTTGATCTGGATCAAATC
Position: -113
Score: 4.6
Sequence: AAATTGATAGCCATCAAAGA
Locus tag: RHE_PD00216
Name: fnrN
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
RHE_PD00216
fnrN
Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
Position: -373
Score: 5.2
Sequence: TTGTTGATGTAGATCAAGGA
Locus tag: RHE_PF00507
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: RHE_PF00506
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: RHE_PF00505
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: RHE_PF00504
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
RHE_PF00507
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
RHE_PF00506
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
RHE_PF00505
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
RHE_PF00504
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -118
Score: 3.7
Sequence: ACTTTGTGCCGGCACAAACA
Position: -95
Score: 4.5
Sequence: AGTTTGCGCCACGTCAAAGA
Locus tag: RHE_PF00525
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: RHE_PF00526
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: RHE_PF00527
Name: nnrR
Funciton: Nitric oxide stress response transcriptional regulator NnrR, Crp family
Locus tag: RHE_PF00528
Name: nnrU
Funciton: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
RHE_PF00525
nirK
Copper-containing nitrite reductase (EC 1.7.2.1)
RHE_PF00526
nirV
Nitrite reductase accessory protein NirV
RHE_PF00527
nnrR
Nitric oxide stress response transcriptional regulator NnrR, Crp family
RHE_PF00528
nnrU
NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
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