Regulon of PckR in Rhizobium etli CFN 42

Properties
Regulator type:	Transcription factor
TF locus tag:	RHE_CH03622
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Central carbohydrate metabolism
Effector:
Regulog:	PckR - Rhizobiales
Statistics of regulated genes:
- Genes	23
- Operons	11
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 99 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By pathway - Central carbohydrate metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -32 Score: 4.8 Sequence: AATTTCAATCGTTTCAAGGA Locus tag: RHE_CH03635 Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
	RHE_CH03635	eda	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
Position: -81 Score: 4.5 Sequence: AAATATAATCGATTAGCATT Locus tag: RHE_CH03543 Name: COG5480 Funciton: Predicted integral membrane protein Locus tag: RHE_CH03542 Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40)
	RHE_CH03543	COG5480	Predicted integral membrane protein
	RHE_CH03542	pykA	Pyruvate kinase (EC 2.7.1.40)
Position: -137 Score: 4.5 Sequence: AATGCTAATCGATTATATTT Locus tag: RHE_CH03544 Name: COG3931 Funciton: Predicted N-formylglutamate amidohydrolase Locus tag: RHE_CH03545 Name: COG3492 Funciton: hypothetical protein
	RHE_CH03544	COG3931	Predicted N-formylglutamate amidohydrolase
	RHE_CH03545	COG3492	hypothetical protein
Position: -65 Score: 4 Sequence: TGGTTAAATCTTTTAATTAA Locus tag: RHE_CH03622 Name: pckR Funciton: Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family Locus tag: RHE_CH03621 Name: hpr Funciton: Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
	RHE_CH03622	pckR	Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
	RHE_CH03621	hpr	Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -169 Score: 4.6 Sequence: AACCCGAATCGATTAAATTA Locus tag: RHE_CH03897 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: RHE_CH03896 Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: RHE_CH03895 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: RHE_CH03894 Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	RHE_CH03897	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	RHE_CH03896	sdhD	Succinate dehydrogenase hydrophobic membrane anchor protein
	RHE_CH03895	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	RHE_CH03894	sdhB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -40 Score: 5.3 Sequence: CGATCAAATCGATTGAATTG Locus tag: RHE_CH00173 Name: mgsA Funciton: Methylglyoxal synthase (EC 4.2.3.3) Locus tag: RHE_CH00172 Name: glk Funciton: Glucokinase (EC 2.7.1.2)
	RHE_CH00173	mgsA	Methylglyoxal synthase (EC 4.2.3.3)
	RHE_CH00172	glk	Glucokinase (EC 2.7.1.2)
Position: -128 Score: 5.2 Sequence: CCTTTCAAACGATTGAATTG Position: -109 Score: 5 Sequence: GATTTCAATCGTTTCAATGA Locus tag: RHE_CH03500 Name: fba Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
	RHE_CH03500	fba	Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Position: -132 Score: 5 Sequence: GCATCTAAACGATTGAAAAT Locus tag: RHE_CH03891 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: RHE_CH03890 Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Locus tag: RHE_CH03889 Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Locus tag: RHE_CH03888 Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
	RHE_CH03891	mdh	Malate dehydrogenase (EC 1.1.1.37)
	RHE_CH03890	sucC	Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
	RHE_CH03889	sucD	Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
	RHE_CH03888	sucA	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Position: -57 Score: 5.5 Sequence: TTTTTAAATCGATTAGATTA Locus tag: RHE_CH00704 Name: zwf Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) Locus tag: RHE_CH00703 Name: pgl Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type Locus tag: RHE_CH00702 Name: edd Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
	RHE_CH00704	zwf	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
	RHE_CH00703	pgl	6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
	RHE_CH00702	edd	Phosphogluconate dehydratase (EC 4.2.1.12)
Position: -158 Score: 5.2 Sequence: CTCTTCAAACGATTTAAAAA Position: -128 Score: 5.4 Sequence: AATTTAAATCGATTAATTAT Locus tag: RHE_CH00037 Name: pckA Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
	RHE_CH00037	pckA	Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -47 Score: 4.7 Sequence: TCGCTTAATCGATTGAAGAA Locus tag: RHE_CH00475 Name: scrK Funciton: Fructokinase (EC 2.7.1.4)
	RHE_CH00475	scrK	Fructokinase (EC 2.7.1.4)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PckR in Rhizobium etli CFN 42

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --