Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Shewanella frigidimarina NCIMB 400

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AlgR Glucuronate; Galacturonate Alginate utilization 2 2
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 23 27
TF BetI Betaine Osmotic stress response 2 1
TF BglR Beta-glucoside Beta-glucosides utilization 4 4
TF BirA Biotin Biotin biosynthesis 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 1
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 188 149
TF CueR2 Copper ion, (Cu+) Copper resistance 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 8 6
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 6 5
TF Fnr Oxygen Anaerobic metabolism 38 30
TF Fur Iron ion, (Fe2+) Iron homeostasis 26 30
TF GcvA Glycine Glycine metabolism 8 6
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 18 23
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 4
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 4 3
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 5 5
TF LexA DNA damage SOS response 11 12
TF LiuR Branched-chain amino acid degradation 9 9
TF LldR L-lactate Lactate utilization 1 1
TF MalR Maltose Maltodextrin utilization 4 6
TF MerR Mercury ion, (Hg2+) Mercury resistance 1 1
TF MetJ S-adenosylmethionine Methionine biosynthesis; Methionine metabolism 13 20
TF MetR Homocysteine Methionine biosynthesis 6 4
TF MtlR Mannitol Mannitol utilization 1 1
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 21 14
TF NhaR Potassium ion Osmotic stress response 2 2
TF NmlR Diamide Carbonyl stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 3 8
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 4 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 4
TF PUR Purine metabolism 5 3
TF PdhR Pyruvate Pyruvate metabolism 11 6
TF PflR Formate Formate metabolism 4 3
TF PhsR Thiosulfate Thiosulfate reduction 1 1
TF PrpR 2-methylcitrate Methylcitrate utilization 1 2
TF PsrA Oleate Fatty acid degradation 17 19
TF SO0072 Hypothetical ABC transporter 2 2
TF SO0193 Fatty acid metabolism 1 1
TF SO3277 Multidrug resistance 2 4
TF SO3393 Drug resistance 2 4
TF SO3494 Multidrug resistance 2 4
TF SO4705 2 2
TF ScrR Sucrose Sucrose utilization 4 4
TF SdaR Glycerate Glycerate utilization 1 1
TF SoxR Paraquat Superoxide stress response 2 2
TF TreR Trehalose Trehalose utilization 3 5
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 20 17
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 3 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 2
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 1 1
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