Regulon of IscR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type:	Transcription factor
TF locus tag:	Sfri_2425
Regulator family:	Rrf2
Regulation mode:	repressor
Biological process:	Iron-sulfur cluster biogenesis
Effector:	Iron-sulfur cluster redox state
Regulog:	IscR - Shewanellaceae
Statistics of regulated genes:
- Genes	10
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 93 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - IscR
By TF family - Rrf2
By effector - Iron-sulfur cluster redox state
By pathway - Iron-sulfur cluster biogenesis

Regulated operons
	Locus Tag	Name	Function
Position: -63 Score: 5.8 Sequence: ATACTTGAACAAAATAGTCAGGTAA Locus tag: Sfri_2976 Name: erpA Funciton: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
	Sfri_2976	erpA	ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
Position: -46 Score: 5.1 Sequence: AATTCTTACTAATTTACTCAGGTAT Locus tag: Sfri_0244 Name: nfuA Funciton: NfuA Fe-S protein maturation
	Sfri_0244	nfuA	NfuA Fe-S protein maturation
Position: -43 Score: 5.6 Sequence: ATATCCGACTGTTTTACTAAGGTAT Locus tag: Sfri_0404 Name: ygbA Funciton: hypothetical protein involved in nitrosative stress
	Sfri_0404	ygbA	hypothetical protein involved in nitrosative stress
Position: -89 Score: 4.5 Sequence: ATACCCGAGTGTTTTGGTAGGATTA Position: -64 Score: 6.2 Sequence: ATACTTGACTAAATTACTAGGGTAT Locus tag: Sfri_2425 Name: iscR Funciton: Iron-sulfur cluster regulator IscR Locus tag: Sfri_2424 Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily Locus tag: Sfri_2423 Name: iscU Funciton: Iron-sulfur cluster assembly scaffold protein IscU Locus tag: Sfri_2422 Name: iscA Funciton: Iron binding protein IscA for iron-sulfur cluster assembly Locus tag: Sfri_2421 Name: hscB Funciton: Chaperone protein HscB Locus tag: Sfri_2420 Name: hscA Funciton: Chaperone protein HscA Locus tag: Sfri_2419 Name: fdx Funciton: ferredoxin, 2Fe-2S type, ISC system
	Sfri_2425	iscR	Iron-sulfur cluster regulator IscR
	Sfri_2424	iscS	Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
	Sfri_2423	iscU	Iron-sulfur cluster assembly scaffold protein IscU
	Sfri_2422	iscA	Iron binding protein IscA for iron-sulfur cluster assembly
	Sfri_2421	hscB	Chaperone protein HscB
	Sfri_2420	hscA	Chaperone protein HscA
	Sfri_2419	fdx	ferredoxin, 2Fe-2S type, ISC system

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD