Collection of regulogs for IscR transcription factor
Genomes | 171 |
TF regulogs | 20 |
TF regulons | 170 |
TF binding sites | 547 |
Transcription factor IscR negatively controls iron-sulfur (Fe-S) cluster synthesis genes in Proteobacteria. It was originally investigated in Escherichia coli as a repressor of the isc and suf operons involved in Fe-S synthesis. The IscR regulators belong to the Rrf2 protein family and contain a [2Fe-2S] cluster, which is required for repressor function as a sensor of the Fe-S status of the cell. The comparative genomic approach was used to identify candidate IscR-binding motifs within DNA regions protected by IscR during the DNAse I footprinting experiments in Enterobacteria. Then IscR regulon was reconstructed by comparative genomic approach in other taxonomic groups including gamma-proteobacteria (5 lineages), beta-proteobacteria [16677314], and alpha-proteobacteria [17173478].
Phylum | Regulog | TF regulons (studied genomes) | TFBSs | Logo |
---|---|---|---|---|
Proteobacteria | IscR - Alteromonadales | 9 (9) | 43 | ![]() |
Proteobacteria | IscR - Burkholderia | 8 (8) | 16 | ![]() |
Proteobacteria | IscR - Caulobacterales | 4 (4) | 4 | ![]() |
Proteobacteria | IscR - Comamonadaceae | 11 (11) | 16 | ![]() |
Proteobacteria | IscR - Desulfuromonadales | 6 (9) | 8 | ![]() |
Proteobacteria | IscR - Moraxellaceae | 4 (4) | 4 | ![]() |
Proteobacteria | IscR - Oceanospirillales/Alteromonadales | 12 (12) | 41 | ![]() |
Proteobacteria | IscR - Pasteurellales | 9 (9) | 22 | ![]() |
Proteobacteria | IscR - Pseudomonadaceae | 8 (8) | 15 | ![]() |
Proteobacteria | IscR - Psychromonadaceae/Aeromonadales | 6 (6) | 14 | ![]() |
Proteobacteria | IscR - Rhodospirillales | 5 (9) | 5 | ![]() |
Proteobacteria | IscR2 - Rhodospirillales | 7 (9) | 7 | ![]() |
Proteobacteria | IscR - Sphingomonadales | 7 (7) | 7 | ![]() |
Proteobacteria | IscR - Various betaproteobacteria | 12 (12) | 27 | ![]() |
Proteobacteria | IscR - Vibrionales | 10 (10) | 39 | ![]() |
Proteobacteria | IscR - Xanthomonadales | 4 (4) | 4 | ![]() |
Proteobacteria/Alpha | IscR - Rhodobacterales | 14 (15) | 125 | ![]() |
Proteobacteria/beta | IscR - Ralstonia | 6 (6) | 12 | ![]() |
Proteobacteria/gamma | IscR - Enterobacteriales | 12 (12) | 45 | ![]() |
Proteobacteria/gamma | IscR - Shewanellaceae | 16 (16) | 93 | ![]() |