Profile of regulator IscR in Rhodobacterales
| Regulator family: | Rrf2 |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron-sulfur cluster biogenesis; Iron homeostasis |
| Effector: | Iron-sulfur cluster redox state; Iron ion, (Fe2+) |
| Regulog: | IscR - Rhodobacterales |
Member of regulog collections
- By trascription factor - IscR
- By taxonomy - Rhodobacterales
- By TF family - Rrf2
- By effector - Iron-sulfur cluster redox state
- By effector - Iron ion, (Fe2+)
- By pathway - Iron-sulfur cluster biogenesis
- By pathway - Iron homeostasis
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | |||||
| RSP_3416 | fecB | -142 | 4.6 | TCCGACTGTTCTTGTCGGA | |
| RSP_0920 | exbB | -134 | 4 | CTTGACTGTTTTCGTAAAC | |
| RSP_6006 | hemP | -228 | 3.9 | ACCGACCGAAAGAATCAGC | |
| RSP_6006 | hemP | -200 | 4.7 | TCCGACTGATTCAGTCACC | |
| RSP_1545 | COG3488 | -56 | 4.4 | TCCGATTGAAAGACTCGGG | |
| RSP_0443 | iscR | -119 | 4.3 | CTTGACAAAAACGCTCGGA | |
| RSP_3417 | RSP_3417 | -204 | 4.6 | TCCGACAAGAACAGTCGGA | |
| RSP_2913 | fbpA | -20 | 3.7 | CCTGACAAAAGAGGTCACA | |
| RSP_2913 | fbpA | -80 | 4.5 | GTTGACTGATAGACTCAGC | |
| RSP_4275 | fecI | -70 | 4.3 | GCCGAGCGATATTGTCGGG | |
| Paracoccus denitrificans PD1222 | |||||
| Pden_3522 | fecB | -128 | 4.1 | TCCTATTCTTTTTGTCGGA | |
| Pden_1139 | fhuA | 24 | 4.3 | CCTGAGTTAATAGCTCGGA | |
| Pden_4201 | hmuR | -89 | 4.1 | ATTGACAGTTTTACTAAGA | |
| Pden_1138 | araX | -81 | 3.8 | CCAGAGTTTTTCAATCAAC | |
| Pden_4141 | hemP | -53 | 4.3 | TCCTAGGAAATTTGTCAGG | |
| Pden_3521 | RSP_3417 | -164 | 4.1 | TCCGACAAAAAGAATAGGA | |
| Jannaschia sp. CCS1 | |||||
| Jann_3277 | null | -31 | 4.8 | CCTGAGTAATACACTCAAG | |
| Jann_3275 | hemP | -259 | 4.4 | GCATACTATTTTAGTCAGG | |
| Jann_3275 | hemP | -287 | 5.2 | TCTGAGTAAAATACTCAGG | |
| Jann_2132 | hmuR | -144 | 4.4 | GTTGACGCTTTTAGTCGGA | |
| Jann_2366 | iscR | -127 | 3 | GATTCCAAATTGTGTCGGG | |
| Jann_1208 | fbpC | -27 | 4 | CCCGATTGAAAAGATCGGA | |
| Jann_1368 | irpA | -253 | 4.7 | TCTGACAAAACAAGTCAGG | |
| Jann_0134 | fbpB | -21 | 3.8 | CCCGACAAAAACACCAAGA | |
| Jann_2122 | fecB | -36 | 5.1 | TCTGACTAAAATACTCAAC | |
| Jann_2122 | fecB | -61 | 4.4 | TCTAACTATTTCTGTCAGC | |
| Jann_2123 | fecC | -59 | 5.1 | GTTGAGTATTTTAGTCAGA | |
| Jann_2123 | fecC | -34 | 4.4 | GCTGACAGAAATAGTTAGA | |
| Jann_0118 | fbpA | -37 | 5.3 | CCTGACTGTTTTAGTCGGA | |
| Jann_0118 | fbpA | -94 | 3.7 | TCAAAGTGTTTTTGTCGGA | |
| Rhodobacterales bacterium HTCC2654 | |||||
| RB2654_09499 | fecC | -87 | 4.7 | GTTGAGTGTTTCAGTCGGA | |
| RB2654_09499 | fecC | -54 | 4.9 | ATTGACTAAATCAGTCGGG | |
| RB2654_15781 | hmuR | -112 | 4.6 | GTTGACTAAATTACTAAGC | |
| RB2654_13154 | irpA | -25 | 3.9 | CCCGATCACTTTACTCGGG | |
| RB2654_08847 | null | -91 | 5.2 | TCCGACTGAATTTGTCAGA | |
| RB2654_09494 | fecB | -67 | 4.9 | CCCGACTGATTTAGTCAAT | |
| RB2654_09494 | fecB | -34 | 4.7 | TCCGACTGAAACACTCAAC | |
| RB2654_04329 | fbpA | -52 | 5.2 | CCTGACGAATTTAGTCAGA | |
| Oceanicola granulosus HTCC2516 | |||||
| OG2516_02803 | fbpC | -44 | 3.6 | CCCGAGCGAAATGTTCGGG | |
| OG2516_03503 | fbpA | -58 | 4.9 | CCCGACCAAAATAGTCAGC | |
| Loktanella vestfoldensis SKA53 | |||||
| SKA53_15396 | null | -45 | 4.8 | CCTGATTATTTATGTCAGG | |
| SKA53_02241 | fbpB | -72 | 4.6 | TCCGATCAAATAAGTCAGA | |
| SKA53_06277 | null | -33 | 5.1 | GCTGACTATATTTGTCGGG | |
| SKA53_06267 | hemP | -47 | 4.8 | GCTGACAGAAATAATCAGA | |
| SKA53_06417 | hmuR | -113 | 4.6 | CTTGACTGTTTGTGTCGGA | |
| SKA53_14131 | hemP | -43 | 5.1 | CCTGACTAAAAAACTCAGG | |
| SKA53_05183 | iscR | -131 | 4.2 | CTTGACGAAAACTATCAGG | |
| SKA53_06010 | fbpC | -29 | 3.6 | CCCAATTGTTTTGATCAGG | |
| SKA53_05313 | fbpA | -53 | 4.1 | CCCAAGTAAAAGAGTCGGG | |
| SKA53_05313 | fbpA | -78 | 4.8 | CCCGACTAAAATATTCAGG | |
| Oceanicola batsensis HTCC2597 | |||||
| OB2597_09404 | fecB | -123 | 3.8 | CCCGCCCAAAACTGTCGGG | |
| OB2597_09404 | fecB | -154 | 4.2 | ATCGACTGTTTTTGTCGGT | |
| OB2597_05425 | hemP | -192 | 4.7 | CTTGACTAATTTGATCGGA | |
| OB2597_05425 | hemP | -149 | 3.9 | TCCGAGTCGAATGCTCGGA | |
| OB2597_05460 | OB2597_05460 | -101 | 4.2 | TCTGACGGTTTTTATCAAC | |
| OB2597_08064 | ISM_05670 | -166 | 4.7 | TCCGACTGATATAGTCACC | |
| OB2597_06825 | null | -125 | 4.1 | GTTGATCGAAAAAGTCGGA | |
| OB2597_06825 | null | -97 | 4.3 | GGTGAGCAAAATAGTCAGG | |
| OB2597_03589 | iscR | -134 | 3.8 | CTTGACGACTTTGGTCAAG | |
| OB2597_00425 | fbpC | -26 | 4.1 | CCTTAGTAAATCCATCGGA | |
| OB2597_09409 | RSP_3417 | -390 | 4.4 | CATGATTGTTTCAGTCGGA | |
| OB2597_09409 | RSP_3417 | -318 | 3.8 | CCCGACAGTTTTGGGCGGG | |
| OB2597_09409 | RSP_3417 | -287 | 4.2 | ACCGACAAAAACAGTCGAT | |
| OB2597_04193 | fbpA | -60 | 4.9 | CCTGACCAAAATACTCGGA | |
| Roseovarius nubinhibens ISM | |||||
| ISM_15940 | SKA53_15391 | -81 | 4.9 | TCCGACTCTTTTTGTCAGA | |
| ISM_05670 | ISM_05670 | -100 | 4.1 | CTTGACTTTTTGCCTCAGG | |
| ISM_00940 | OB2597_05460 | -117 | 4.9 | CCTGAGTAAAAGACTCAGG | |
| ISM_04265 | Mlr1156 | -132 | 4 | TCCGACTATTTCATTTAGG | |
| ISM_04235 | hmuR | -157 | 4.4 | CTTGACAGTTTTAGTCTGA | |
| ISM_01000 | hemP | -205 | 5.2 | TCTGACTAAAAAAGTCGGA | |
| ISM_01000 | hemP | -178 | 4.8 | TCTGACAGAATAAATCAGA | |
| ISM_04365 | irpA | -82 | 4.9 | CCCGAGTATTTCACTCAGG | |
| ISM_15910 | fbpC | -46 | 4.5 | CCCGAGTGAATTGATCGGA | |
| ISM_05125 | fbpA | -104 | 5.2 | TCCGAGTATTTTAGTCGGA | |
| ISM_05125 | fbpA | -138 | 5.4 | CTTGACTAAATTAGTCGGA | |
| Roseovarius sp. 217 | |||||
| ROS217_22877 | araX | -165 | 4.1 | CCTGATGTAATTTGTCAAC | |
| ROS217_17442 | hmuR | -198 | 4.4 | CTTGACTCTTTTACTCATA | |
| ROS217_22882 | fhuA | -30 | 4.7 | CCTGAGTTAAAGAGTCGGA | |
| ROS217_23865 | hemP | -152 | 4.2 | TCTGATCAAAAGAATCGGA | |
| ROS217_23865 | hemP | -124 | 4.7 | CCTTATTAATTAAGTCAGA | |
| ROS217_10107 | irpA | -147 | 4.6 | GCCTACTAAATCAGTCAAC | |
| ROS217_20542 | iscR | -120 | 3.5 | CTTGACGACTTCGCTCGGG | |
| ROS217_20592 | fbpC | -36 | 4.1 | CCCGATAGATTTGATCGGA | |
| ROS217_23057 | fbpA | -38 | 3.8 | CCCCATCAAATCACTCGGA | |
| ROS217_23057 | fbpA | -70 | 4.8 | ATTGACTCTTTTAGTCAGA | |
| Sulfitobacter sp. EE-36 | |||||
| EE36_01780 | fhuA2 | -30 | 4.9 | TCCGACTAAAACAGTAAGG | |
| EE36_01780 | fhuA2 | -251 | 3.8 | TCTTACTTTATTTATAGGG | |
| EE36_10454 | EE36_10454 | -82 | 4.3 | CTTGATTGTTTTTATCAGC | |
| EE36_01780 | fhuA2 | -72 | 3.7 | CCTTACTATTTCAGTTTGA | |
| EE36_01535 | hmuR | -256 | 4.3 | GTTGACACTTTTAGTCGGT | |
| EE36_12993 | Mlr1156 | -167 | 4.4 | GTTGATTGTTAAAGTCAGG | |
| EE36_08018 | araX | -113 | 5.2 | TCCGAGTAAATTTGTCAGA | |
| EE36_08023 | fhuA | -44 | 4.6 | ACTGAGTTAAATACTCGGA | |
| EE36_14302 | iscR | -136 | 3.6 | GTTGACGAATTCGCTAGGG | |
| EE36_10464 | hemP | -274 | 5 | TCCGACTAAAACTGTCGGA | |
| EE36_10464 | hemP | -247 | 4.1 | CCCTATAATTTCAATCAGG | |
| EE36_02713 | irpA | -140 | 4.8 | TCTTACTAAAATTGTCGGG | |
| EE36_16412 | fbpC | -32 | 4.1 | CCCGAGCGAATTGATCGGA | |
| EE36_05618 | fbpB | -28 | 5.1 | TCCGACTGAATTAGTCGAA | |
| EE36_05613 | fbpA | -91 | 4.4 | TCCTATTAATTCACTCAAG | |
| EE36_05613 | fbpA | -42 | 3.7 | TCTTACTGTTTTTATAGGT | |
| Silicibacter TM1040 | |||||
| TM1040_2633 | TM1040_2633 | -116 | 4.5 | TCCGACAAAAATACTAGGG | |
| TM1040_0347 | hmuR | -143 | 3.9 | CTTGACAGATTTAATAAAT | |
| TM1040_1240 | iscR | -137 | 3.9 | CTTGACGAATTTTATCCGG | |
| TM1040_2198 | hemP | -258 | 4.7 | TCTGACCAAATAAATCAGG | |
| TM1040_2200 | bfd | -103 | 4.1 | CCTGATCAAAACAGTCCGA | |
| TM1040_2200 | bfd | -71 | 4.2 | GCTTATTCTTTTACTCGGA | |
| TM1040_0122 | fbpB | -50 | 3.7 | TCCGACAAAAATGCTTGAA | |
| TM1040_0124 | fbpA | -126 | 5 | TCTGACTGAATTTATCGGA | |
| Silicibacter pomeroyi DSS-3 | |||||
| SPO2025 | iscR | -141 | 4.1 | CTTGACGAATTCCCTCGGG | |
| SPO0086 | irpA | -88 | 5.2 | ACTGACAAATTTAGTCAGA | |
| SPO0789 | hemP | -99 | 4.6 | GGCGACAAAAATAGTCAGG | |
| SPO3288 | fbpB | -27 | 4.1 | TCCGACTAAACTGGTCGAT | |
| SPO3287 | fbpA | -50 | 4.7 | CCCGACTGAAATAATCAGT | |
| Roseobacter sp. MED193 | |||||
| MED193_17504 | hmuR | 69 | 4 | GTTGACTGTTTTTATCACC | |
| MED193_15812 | TM1040_2633 | -139 | 5.3 | TCTGACTATTTTTGTCAGA | |
| MED193_04321 | iscR | -144 | 4 | CTTGACGAATTCCATCAGC | |
| MED193_19679 | MED193_19679 | -118 | 5.3 | TCTGACAAAAATAGTCAGA | |
| MED193_19679 | MED193_19679 | -91 | 4.7 | CTTGATTGTTTTAATCAGG | |
| MED193_19654 | bfd | -103 | 4.4 | CCTGACAAAAACAATAAGC | |
| MED193_19654 | bfd | -72 | 4.5 | CCTTATTGTTTTTGTCAGA | |
| MED193_12813 | fbpB | -58 | 3.8 | TCCGACCAAAATGATCGCA | |
| MED193_12793 | fbpA | -65 | 4.2 | ACTGACAAAAGAAGTCGGA | |
| MED193_22076 | fecB | -355 | 4 | CTTGACAAAACCTGTAAGG | |
| Oceanicaulis alexandrii HTCC2633 | |||||
| OA2633_03081 | dps | -247 | 4.1 | TCCGTGTGTATCAATCAGG | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |