Regulog IscR - Caulobacterales
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | activator (repressor) |
| Biological process: | Iron-sulfur cluster biogenesis |
| Effector: | Iron-sulfur cluster redox state |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Caulobacterales
- By trascription factor - IscR
- By TF family - Rrf2
- By effector - Iron-sulfur cluster redox state
- By pathway - Iron-sulfur cluster biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | 1 | 1 |
| Caulobacter segnis ATCC 21756 | 8 | 1 |
| Caulobacter sp. K31 | 10 | 1 |
| Phenylobacterium zucineum HLK1 | 8 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| iscR |
*
Caulobacter crescentus CB15 Site: position = -128 score = 8.40483 sequence = ATACTTGACCGCCGCGCTTGGTCTT Gene: CC1866: Iron-sulfur cluster regulator IscR |
*
Caulobacter segnis ATCC 21756 Site: position = -127 score = 8.40483 sequence = ATACTTGACCGCCGCGCTTGGTCTT Gene: Cseg_2153: Iron-sulfur cluster regulator IscR |
*
Caulobacter sp. K31 Site: position = -137 score = 8.40483 sequence = ATACTTGACCGCTGCGCTTGGTCTT Gene: Caul_2586: Iron-sulfur cluster regulator IscR |
*
Phenylobacterium zucineum HLK1 Site: position = -138 score = 8.07733 sequence = ATACTTGACTGCTGCGCTAGGTCTT Gene: PHZ_c1722: Iron-sulfur cluster regulator IscR |
Iron-sulfur cluster regulator IscR |
| iscS |
Gene: CC1865: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily |
Gene: Cseg_2152: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily |
Gene: Caul_2587: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily |
Gene: PHZ_c1721: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily |
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily |
| sufB |
Gene: CC1864: Iron-sulfur cluster assembly protein SufB |
Gene: Cseg_2151: Iron-sulfur cluster assembly protein SufB |
Gene: Caul_2588: Iron-sulfur cluster assembly protein SufB |
Gene: PHZ_c1720: Iron-sulfur cluster assembly protein SufB |
Iron-sulfur cluster assembly protein SufB |
| Caul_2589 |
|
|
Gene: Caul_2589: Hypothetical protein |
|
Hypothetical protein |
| Caul_2590 |
|
|
Gene: Caul_2590: Hypothetical protein |
|
Hypothetical protein |
| sufC |
Gene: CC1862: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: Cseg_2150: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: Caul_2591: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: PHZ_c1719: Iron-sulfur cluster assembly ATPase protein SufC |
Iron-sulfur cluster assembly ATPase protein SufC |
| sufD |
Gene: CC1861: Iron-sulfur cluster assembly protein SufD |
Gene: Cseg_2149: Iron-sulfur cluster assembly protein SufD |
Gene: Caul_2592: Iron-sulfur cluster assembly protein SufD |
Gene: PHZ_c1718: Iron-sulfur cluster assembly protein SufD |
Iron-sulfur cluster assembly protein SufD |
| sufS |
Gene: CC1860: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Cseg_2148: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Caul_2593: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: PHZ_c1717: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
| sufT |
Gene: CC1859: Iron sulfur cluster assembly protein SufT |
Gene: Cseg_2147: Iron sulfur cluster assembly protein SufT |
Gene: Caul_2594: Iron sulfur cluster assembly protein SufT |
Gene: PHZ_c1716: Iron sulfur cluster assembly protein SufT |
Iron sulfur cluster assembly protein SufT |
| sufA |
Gene: CC1858: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: Cseg_2146: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: Caul_2595: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: PHZ_c1715: Iron binding protein SufA for iron-sulfur cluster assembly |
Iron binding protein SufA for iron-sulfur cluster assembly |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |