Regulon of FadR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type:	Transcription factor
TF locus tag:	Sfri_1743
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Shewanellaceae
Statistics of regulated genes:
- Genes	6
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 101 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -82 Score: 4.9 Sequence: TGATGGTCTGACCAGAT Locus tag: Sfri_2677 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: Sfri_2676 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	Sfri_2677	fadI	FadI component of anaerobic fatty acid oxidation complex
	Sfri_2676	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -117 Score: 4.6 Sequence: ATCTGGTCGGAGTTGTT Locus tag: Sfri_2687 Name: fadL Funciton: Long-chain fatty acid transport protein
	Sfri_2687	fadL	Long-chain fatty acid transport protein
Position: -29 Score: 4.6 Sequence: AACTGGACTGACCAGCA Locus tag: Sfri_3510 Name: SO0572 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	Sfri_3510	SO0572	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -59 Score: 3.5 Sequence: CTCTGGTATGATCAGTC Locus tag: Sfri_1743 Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family
	Sfri_1743	fadR	Transcriptional regulator for fatty acid degradation FadR, GntR family
Position: -88 Score: 3.7 Sequence: CACAGGTCTGACCACGC Locus tag: Sfri_1869 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Sfri_1869	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD