Regulon of FadR in Shewanella frigidimarina NCIMB 400
| Regulator type: | Transcription factor |
| TF locus tag: | Sfri_1743 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor (activator) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Regulog: | FadR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - FadR
- By TF family - GntR/Others
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -82
Score: 4.9 Sequence: TGATGGTCTGACCAGAT
Locus tag: Sfri_2677
Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex
Locus tag: Sfri_2676
Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex |
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fadI
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FadI component of anaerobic fatty acid oxidation complex
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fadJ
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FadJ component of anaerobic fatty acid oxidation complex
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Position: -117
Score: 4.6 Sequence: ATCTGGTCGGAGTTGTT
Locus tag: Sfri_2687
Name: fadL Funciton: Long-chain fatty acid transport protein |
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fadL
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Long-chain fatty acid transport protein
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Position: -29
Score: 4.6 Sequence: AACTGGACTGACCAGCA
Locus tag: Sfri_3510
Name: SO0572 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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SO0572
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -59
Score: 3.5 Sequence: CTCTGGTATGATCAGTC
Locus tag: Sfri_1743
Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family |
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fadR
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Transcriptional regulator for fatty acid degradation FadR, GntR family
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Position: -88
Score: 3.7 Sequence: CACAGGTCTGACCACGC
Locus tag: Sfri_1869
Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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fadE
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |