Regulon of Fur in Shewanella frigidimarina NCIMB 400

Properties
Regulator type:	Transcription factor
TF locus tag:	Sfri_2338
Regulator family:	FUR
Regulation mode:	repressor (activator)
Biological process:	Iron homeostasis
Effector:	Iron ion, (Fe2+)
Regulog:	Fur - Shewanellaceae
Statistics of regulated genes:
- Genes	39
- Operons	24
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 505 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FUR
By TF family - FUR
By effector - Iron ion, (Fe2+)
By pathway - Iron homeostasis

Regulated operons
	Locus Tag	Name	Function
Position: -48 Score: 6 Sequence: TAATGCAAATCATTATCATTT Locus tag: Sfri_0202 Name: Sfri_0202 Funciton: Conserved hypothetical protein Locus tag: Sfri_0203 Name: null Funciton: Hypothetical protein Locus tag: Sfri_0204 Name: puiB Funciton: Uncharacterized iron-regulated membrane protein, PiuB
	Sfri_0202	Sfri_0202	Conserved hypothetical protein
	Sfri_0203		Hypothetical protein
	Sfri_0204	puiB	Uncharacterized iron-regulated membrane protein, PiuB
Position: -32 Score: 5.6 Sequence: TAATGGTAATCGTTATCATTA Locus tag: Sfri_2150 Name: null Funciton: Two component transcriptional regulator, Winged helix family
	Sfri_2150		Two component transcriptional regulator, Winged helix family
Position: -90 Score: 5.7 Sequence: AAATGATAATGATTTCTATTT Locus tag: Sfri_3717 Name: Sden_3064 Funciton: TonB-dependent receptor
	Sfri_3717	Sden_3064	TonB-dependent receptor
Position: -195 Score: 5 Sequence: GATTGATAACGAATCTCAATA Position: -168 Score: 5.5 Sequence: GAGTGATAATTATTATCAATT Position: -91 Score: 5.6 Sequence: TAATGATAATCATTAGCAATA Locus tag: Sfri_2549 Name: Sden_3064 Funciton: TonB-dependent receptor
	Sfri_2549	Sden_3064	TonB-dependent receptor
Position: -80 Score: 5.3 Sequence: AAACGAGACTGATTATCATTT Locus tag: Sfri_3875 Name: null Funciton: Hypothetical outer membrane protein
	Sfri_3875		Hypothetical outer membrane protein
Position: -121 Score: 6 Sequence: TAATGATAATAGTTATCAATT Locus tag: Sfri_0957 Name: bfr2 Funciton: Bacterioferritin subunit 2 Locus tag: Sfri_0958 Name: bfr1 Funciton: Bacterioferritin subunit 1
	Sfri_0957	bfr2	Bacterioferritin subunit 2
	Sfri_0958	bfr1	Bacterioferritin subunit 1
Position: -106 Score: 5.6 Sequence: TAATGATAATGGTTTGCATTA Locus tag: Sfri_4035 Name: Sfri_4035 Funciton: Conserved hypothetical signal peptide protein, possibly porin Locus tag: Sfri_4034 Name: null Funciton: FMN-binding domain-containing protein Locus tag: Sfri_4033 Name: COG3182 Funciton: PepSY-associated TM helix domain-containing protein
	Sfri_4035	Sfri_4035	Conserved hypothetical signal peptide protein, possibly porin
	Sfri_4034		FMN-binding domain-containing protein
	Sfri_4033	COG3182	PepSY-associated TM helix domain-containing protein
Position: -68 Score: 5.4 Sequence: AAATGGAAACGCTTCTCATTT Locus tag: Sfri_4042 Name: null Funciton: TonB-dependent siderophore receptor
	Sfri_4042		TonB-dependent siderophore receptor
Position: -30 Score: 5.4 Sequence: TATTGAAAATGATTATCAATG Locus tag: Sfri_2159 Name: null Funciton: Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon
	Sfri_2159		Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon
Position: -46 Score: 6 Sequence: TAATGAGAACTGTTATCATTT Locus tag: Sfri_4031 Name: null Funciton: Conserved hypothetical inner membrane protein
	Sfri_4031		Conserved hypothetical inner membrane protein
Position: -184 Score: 5.6 Sequence: TATTGCTAATGATTATCATTA Position: -107 Score: 5.5 Sequence: AATTGATAATAATTATCACTC Position: -80 Score: 5 Sequence: TATTGAGATTCGTTATCAATC Locus tag: Sfri_2548 Name: COG3182 Funciton: PepSY-associated TM helix domain-containing protein Locus tag: Sfri_2547 Name: Sfri_2547 Funciton: Conserved hypothetical protein
	Sfri_2548	COG3182	PepSY-associated TM helix domain-containing protein
	Sfri_2547	Sfri_2547	Conserved hypothetical protein
Position: -75 Score: 5.7 Sequence: AAATGAGAATAGTTTCCATTA Locus tag: Sfri_0391 Name: null Funciton: TonB-dependent siderophore receptor
	Sfri_0391		TonB-dependent siderophore receptor
Position: -116 Score: 6 Sequence: AATTGATAACTATTCTCATTA Locus tag: Sfri_2008 Name: Sfri_2008 Funciton: Hypothetical protein
	Sfri_2008	Sfri_2008	Hypothetical protein
Position: -103 Score: 5.8 Sequence: AAATGATAATGATTTGTATTT Locus tag: Sfri_0611 Name: null Funciton: TonB-dependent siderophore receptor Locus tag: Sfri_0612 Name: piuC Funciton: Iron-uptake factor PiuC
	Sfri_0611		TonB-dependent siderophore receptor
	Sfri_0612	piuC	Iron-uptake factor PiuC
Position: -78 Score: 5.6 Sequence: TAATGCGAATCGTTATCAATT Locus tag: Sfri_0810 Name: Sfri_0810 Funciton: Hypothetical protein Locus tag: Sfri_0811 Name: Sfri_0811 Funciton: Imelysin peptidase family lipoprotein Locus tag: Sfri_0812 Name: Sfri_0812 Funciton: Protein of unknown function DUF1111
	Sfri_0810	Sfri_0810	Hypothetical protein
	Sfri_0811	Sfri_0811	Imelysin peptidase family lipoprotein
	Sfri_0812	Sfri_0812	Protein of unknown function DUF1111
Position: -111 Score: 5.1 Sequence: AACTGAAAACTATTCTCGTTA Locus tag: Sfri_2617 Name: feoA Funciton: Ferrous iron transport protein A Locus tag: Sfri_2616 Name: feoB Funciton: Ferrous iron transport protein B
	Sfri_2617	feoA	Ferrous iron transport protein A
	Sfri_2616	feoB	Ferrous iron transport protein B
Position: -102 Score: 5 Sequence: GATTGATAATCGTTGTTATTA Locus tag: Sfri_3225 Name: omp Funciton: TonB-dependent siderophore receptor Locus tag: Sfri_3224 Name: null Funciton: Iron-regulated inner membrane protein Locus tag: Sfri_3223 Name: null Funciton: Iron-regulated inner membrane protein Locus tag: Sfri_3222 Name: null Funciton: Iron-regulated membrane protein
	Sfri_3225	omp	TonB-dependent siderophore receptor
	Sfri_3224		Iron-regulated inner membrane protein
	Sfri_3223		Iron-regulated inner membrane protein
	Sfri_3222		Iron-regulated membrane protein
Position: -54 Score: 5.9 Sequence: TAATGATAATGAATATCATTA Locus tag: Sfri_0392 Name: SO4423.1 Funciton: TonB-dependent ferric achromobactin receptor
	Sfri_0392	SO4423.1	TonB-dependent ferric achromobactin receptor
Position: -67 Score: 5.9 Sequence: AATTGATAACCATTATCAATT Locus tag: Sfri_0636 Name: fbpA Funciton: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA Locus tag: Sfri_0637 Name: fbpB Funciton: ABC iron(III) transporter, inner membrane subunit, FbpB Locus tag: Sfri_0638 Name: fbpC Funciton: ABC iron(III) transporter, ATPase subunit, FbpC
	Sfri_0636	fbpA	ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
	Sfri_0637	fbpB	ABC iron(III) transporter, inner membrane subunit, FbpB
	Sfri_0638	fbpC	ABC iron(III) transporter, ATPase subunit, FbpC
Position: -76 Score: 5.7 Sequence: CAATGATAACCGTTTTCATTT Locus tag: Sfri_3324 Name: bfd Funciton: Bacterioferritin-associated ferredoxin
	Sfri_3324	bfd	Bacterioferritin-associated ferredoxin
Position: -309 Score: 5.8 Sequence: AAATGAGAATAATTATCAAAA Locus tag: Sfri_3851 Name: Sfri_3851 Funciton: TonB-dependent siderophore receptor
	Sfri_3851	Sfri_3851	TonB-dependent siderophore receptor
Position: -52 Score: 5.6 Sequence: TTATGATAATCATTATCATTC Locus tag: Sfri_2440 Name: null Funciton: TonB-dependent receptor
	Sfri_2440		TonB-dependent receptor
Position: -90 Score: 5.7 Sequence: AAATGATAATGATTTCTATTT Locus tag: Sfri_3717 Name: null Funciton: TonB-dependent siderophore receptor
	Sfri_3717		TonB-dependent siderophore receptor
Position: -195 Score: 5 Sequence: GATTGATAACGAATCTCAATA Position: -168 Score: 5.5 Sequence: GAGTGATAATTATTATCAATT Position: -91 Score: 5.6 Sequence: TAATGATAATCATTAGCAATA Locus tag: Sfri_2549 Name: null Funciton: TonB-dependent siderophore receptor
	Sfri_2549		TonB-dependent siderophore receptor

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Fur in Shewanella frigidimarina NCIMB 400

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --