Regulon of ArgR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type:	Transcription factor
TF locus tag:	Sfri_0640
Regulator family:	ArgR
Regulation mode:	repressor (activator)
Biological process:	Arginine degradation; Arginine biosynthesis
Effector:	Arginine
Regulog:	ArgR - Shewanellaceae
Statistics of regulated genes:
- Genes	38
- Operons	16
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 502 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - ArgR
By TF family - ArgR
By effector - Arginine
By pathway - Arginine degradation
By pathway - Arginine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -301 Score: 4.4 Sequence: TATGTGTAATTATTCACT Position: -241 Score: 3.9 Sequence: TATGACTATTTATGCTTC Position: -189 Score: 4 Sequence: TATCAATCTTTATGCAGA Locus tag: Sfri_3299 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: Sfri_3298 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: Sfri_3297 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: Sfri_3296 Name: SO0620 Funciton: Conserved hypothetical protein
	Sfri_3299	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	Sfri_3298	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	Sfri_3297	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	Sfri_3296	SO0620	Conserved hypothetical protein
Position: -186 Score: 5 Sequence: AGTGCATTTTTAGTCATT Locus tag: Sfri_2479 Name: astB Funciton: Succinylarginine dihydrolase (EC 3.5.3.23)
	Sfri_2479	astB	Succinylarginine dihydrolase (EC 3.5.3.23)
Position: -59 Score: 4.9 Sequence: AGTGCATTAAAATCCATT Locus tag: Sfri_0192 Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8) Locus tag: Sfri_0193 Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: Sfri_0194 Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) Locus tag: Sfri_0195 Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1)
	Sfri_0192	argB	Acetylglutamate kinase (EC 2.7.2.8)
	Sfri_0193	argF	Ornithine carbamoyltransferase (EC 2.1.3.3)
	Sfri_0194	argG	Argininosuccinate synthase (EC 6.3.4.5)
	Sfri_0195	argH	Argininosuccinate lyase (EC 4.3.2.1)
Position: -61 Score: 4.4 Sequence: CTTGAATGTGCATTCAAT Position: -33 Score: 4.2 Sequence: CTTGAATGCATATTCAAG Locus tag: Sfri_1089 Name: SO3392 Funciton: NADH-dependent flavin oxidoreductase, Oye family
	Sfri_1089	SO3392	NADH-dependent flavin oxidoreductase, Oye family
Position: -268 Score: 4.2 Sequence: AGTGCATAAATCCTCATT Position: -114 Score: 4.1 Sequence: GGTGAACACTTATTCACA Locus tag: Sfri_1720 Name: hisG Funciton: ATP phosphoribosyltransferase (EC 2.4.2.17) Locus tag: Sfri_1719 Name: hisD Funciton: Histidinol dehydrogenase (EC 1.1.1.23) Locus tag: Sfri_1718 Name: hisC Funciton: Histidinol-phosphate aminotransferase (EC 2.6.1.9) Locus tag: Sfri_1717 Name: hisB Funciton: Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) Locus tag: Sfri_1716 Name: hisH Funciton: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) Locus tag: Sfri_1715 Name: hisA Funciton: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) Locus tag: Sfri_1714 Name: hisF Funciton: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) Locus tag: Sfri_1713 Name: hisI Funciton: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
	Sfri_1720	hisG	ATP phosphoribosyltransferase (EC 2.4.2.17)
	Sfri_1719	hisD	Histidinol dehydrogenase (EC 1.1.1.23)
	Sfri_1718	hisC	Histidinol-phosphate aminotransferase (EC 2.6.1.9)
	Sfri_1717	hisB	Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
	Sfri_1716	hisH	Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
	Sfri_1715	hisA	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
	Sfri_1714	hisF	Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
	Sfri_1713	hisI	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
Position: -112 Score: 3.6 Sequence: GATGATAAAATAGTCAAC Position: -71 Score: 4.6 Sequence: ACTGTATATAAAATCAGT Position: -49 Score: 3.7 Sequence: ACTGTTTATCAATACAGT Locus tag: Sfri_1043 Name: recN Funciton: DNA repair protein RecN
	Sfri_1043	recN	DNA repair protein RecN
Position: -190 Score: 5.4 Sequence: GTTGAATTTTAATTCAAA Locus tag: Sfri_2692 Name: aprE Funciton: Alkaline serine protease
	Sfri_2692	aprE	Alkaline serine protease
Position: -130 Score: 4.2 Sequence: AGTGAAATAAAATGCTTT Position: -109 Score: 5.6 Sequence: AGTGAATTAAAATGCAAT Locus tag: Sfri_3825 Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1)
	Sfri_3825	argA	N-acetylglutamate synthase (EC 2.3.1.1)
Position: -249 Score: 3.9 Sequence: ACTGAATGATTATTGCAA Position: -228 Score: 4 Sequence: AGTGATTTTTTAACCAAT Locus tag: Sfri_3009 Name: potF Funciton: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2) Locus tag: Sfri_3008 Name: potG Funciton: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2) Locus tag: Sfri_3007 Name: potH Funciton: Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2) Locus tag: Sfri_3006 Name: potI Funciton: Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
	Sfri_3009	potF	Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
	Sfri_3008	potG	Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
	Sfri_3007	potH	Putrescine ABC transporter, permease protein 1 (TC 3.A.1.11.2)
	Sfri_3006	potI	Putrescine ABC transporter, permease protein 2 (TC 3.A.1.11.2)
Position: -88 Score: 4.8 Sequence: ACTGAATGGACATTCAAT Locus tag: Sfri_1012 Name: argW Funciton: Predicted arginine uptake transporter, COG3314 family
	Sfri_1012	argW	Predicted arginine uptake transporter, COG3314 family
Position: -202 Score: 4.6 Sequence: AGTGATTATTAAGTCACA Locus tag: Sfri_0422 Name: ilvG Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: Sfri_0423 Name: ilvM Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: Sfri_0424 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9) Locus tag: Sfri_0425 Name: ilvA Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
	Sfri_0422	ilvG	Acetolactate synthase large subunit (EC 2.2.1.6)
	Sfri_0423	ilvM	Acetolactate synthase small subunit (EC 2.2.1.6)
	Sfri_0424	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
	Sfri_0425	ilvA	Threonine dehydratase biosynthetic (EC 4.3.1.19)
Position: -358 Score: 5 Sequence: AATGAATATTTAATCATT Position: -312 Score: 4.3 Sequence: TTTAAAATAAAATTCACT Locus tag: Sfri_2951 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: Sfri_2952 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	Sfri_2951	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	Sfri_2952	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -451 Score: 4.9 Sequence: TCTGAATAAATACTCAGT Position: -72 Score: 4.2 Sequence: ACTGACCAATTATTCATA Locus tag: Sfri_2416 Name: omp(Arg) Funciton: TonB-dependent receptor
	Sfri_2416	omp(Arg)	TonB-dependent receptor
Position: -182 Score: 3.8 Sequence: GTTGAATAATCGTTGAGT Position: -165 Score: 4.6 Sequence: TTTGAATATTTATGCTTT Locus tag: Sfri_1065 Name: oadG Funciton: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3) Locus tag: Sfri_1066 Name: oadA Funciton: Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3) Locus tag: Sfri_1067 Name: oadB Funciton: Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
	Sfri_1065	oadG	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
	Sfri_1066	oadA	Oxaloacetate decarboxylase, alpha chain (EC 4.1.1.3)
	Sfri_1067	oadB	Oxaloacetate decarboxylase, beta chain (EC 4.1.1.3)
Position: -104 Score: 5.6 Sequence: AATGAATTTTTATTCAAT Locus tag: Sfri_0640 Name: argR Funciton: Arginine metabolism transcriptional regulator ArgR
	Sfri_0640	argR	Arginine metabolism transcriptional regulator ArgR
Position: -114 Score: 4.4 Sequence: TCTGAGTGAACATTCATA Locus tag: Sfri_0893 Name: SO0762 Funciton: Isochorismate hydrolase (EC 3.3.2.1)
	Sfri_0893	SO0762	Isochorismate hydrolase (EC 3.3.2.1)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of ArgR in Shewanella frigidimarina NCIMB 400

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --