Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_2018
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 64
- Operons 24
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -151
Score: 4.5
Sequence: GTGATGTGAATCAT
Locus tag: Sfri_1748
Name: ydhD
Funciton: Glutaredoxin-related protein
Sfri_1748
ydhD
Glutaredoxin-related protein
Position: -75
Score: 4.3
Sequence: TTGATCAAGATCAG
Locus tag: Sfri_0507
Name: Sama_0549
Funciton: Conserved hypothetical protein
Sfri_0507
Sama_0549
Conserved hypothetical protein
Position: -154
Score: 4.6
Sequence: TTGATCTAAATCAC
Locus tag: Sfri_2947
Name: cyaB
Funciton: Adenylate cyclase (EC 4.6.1.1)
Sfri_2947
cyaB
Adenylate cyclase (EC 4.6.1.1)
Position: -338
Score: 4.2
Sequence: ATGATTGTGATCAA
Locus tag: Sfri_1142
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sfri_1143
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sfri_1144
Name: ybgT
Funciton: Cyd operon protein YbgT
Sfri_1142
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Sfri_1143
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Sfri_1144
ybgT
Cyd operon protein YbgT
Position: -31
Score: 4.5
Sequence: ATTATCTAGATCAT
Locus tag: Sfri_0679
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Sfri_0678
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Sfri_0679
frdA
Fumarate reductase, flavoprotein subunit
Sfri_0678
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -224
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -182
Score: 4.3
Sequence: TTGACTTAGCTCAA
Locus tag: Sfri_2010
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Sfri_2011
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Sfri_2012
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Sfri_2013
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Sfri_2014
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Sfri_2015
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Sfri_2016
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Sfri_2017
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Sfri_2010
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Sfri_2011
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Sfri_2012
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Sfri_2013
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Sfri_2014
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Sfri_2015
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Sfri_2016
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Sfri_2017
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
Position: -146
Score: 5.3
Sequence: ATGATCTAGATCAT
Locus tag: Sfri_2555
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sfri_2554
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sfri_2553
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sfri_2552
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sfri_2551
Name: napC2
Funciton: Cytochrome c-type protein NapC
Sfri_2555
napE2
Periplasmic nitrate reductase component NapE
Sfri_2554
napD2
Periplasmic nitrate reductase component NapD
Sfri_2553
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sfri_2552
napB2
Nitrate reductase cytochrome c550-type subunit
Sfri_2551
napC2
Cytochrome c-type protein NapC
Position: -138
Score: 4.9
Sequence: TTGATCTGGCGCAA
Locus tag: Sfri_0622
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Sfri_0622
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -87
Score: 4.6
Sequence: ATGATCTATCTCAA
Locus tag: Sfri_2019
Name: uspE
Funciton: Universal stress protein E
Sfri_2019
uspE
Universal stress protein E
Position: -166
Score: 4.6
Sequence: GTGATCCAAATCAA
Position: -105
Score: 5.3
Sequence: TTGATCTAAATCAA
Locus tag: Sfri_1334
Name: ompW
Funciton: Outer membrane protein W precursor
Sfri_1334
ompW
Outer membrane protein W precursor
Position: -159
Score: 4.5
Sequence: TTGCGCCAGATCAA
Locus tag: Sfri_0621
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Sfri_0620
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Sfri_0621
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Sfri_0620
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -317
Score: 4.9
Sequence: GTGATCTTGATCAA
Position: -209
Score: 4.8
Sequence: ATGATCCAAATCAA
Locus tag: Sfri_0258
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Sfri_0257
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Sfri_0256
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Sfri_0255
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Sfri_0258
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Sfri_0257
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Sfri_0256
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
Sfri_0255
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -37
Score: 4.5
Sequence: TTGATCGAGATCAC
Locus tag: Sfri_0957
Name: bfr2
Funciton: Bacterioferritin
Locus tag: Sfri_0958
Name: bfr1
Funciton: Bacterioferritin
Sfri_0957
bfr2
Bacterioferritin
Sfri_0958
bfr1
Bacterioferritin
Position: -111
Score: 4.2
Sequence: TTGATTACGATCAA
Locus tag: Sfri_0616
Name: nrfX
Funciton: Nitrite reductase, predicted component
Locus tag: Sfri_0615
Name: nrfB
Funciton: Nitrite reductase, subunit B
Locus tag: Sfri_0614
Name: nrfC
Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit
Locus tag: Sfri_0613
Name: nrfD
Funciton: Nitrite reductase, cytochrome c subunit
Sfri_0616
nrfX
Nitrite reductase, predicted component
Sfri_0615
nrfB
Nitrite reductase, subunit B
Sfri_0614
nrfC
Nitrite reductase, 4Fe-4S ferredoxin subunit
Sfri_0613
nrfD
Nitrite reductase, cytochrome c subunit
Position: -112
Score: 5
Sequence: ATGATCTCGATCAA
Locus tag: Sfri_2793
Name: lldP
Funciton: L-lactate permease
Locus tag: Sfri_2794
Name: dld
Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Sfri_2793
lldP
L-lactate permease
Sfri_2794
dld
Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -143
Score: 5
Sequence: TTGATCTAGGTCAA
Locus tag: Sfri_3699
Name: hmp
Funciton: Nitric oxide dioxygenase (EC 1.14.12.17)
Sfri_3699
hmp
Nitric oxide dioxygenase (EC 1.14.12.17)
Position: -249
Score: 4.4
Sequence: AAGATCCAGATCAA
Position: -79
Score: 5
Sequence: TTGATCTAGATCGA
Locus tag: Sfri_3879
Name: Sfri_3879
Funciton: Predicted sodium/sulphate symporter
Sfri_3879
Sfri_3879
Predicted sodium/sulphate symporter
Position: -121
Score: 4.5
Sequence: GTGATGTGGCTCAT
Locus tag: Sfri_3609
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Sfri_3608
Name: hcr
Funciton: HCP oxidoreductase, NADH-dependent
Sfri_3609
hcp
Hydroxylamine reductase (EC 1.7.-.-)
Sfri_3608
hcr
HCP oxidoreductase, NADH-dependent
Position: -73
Score: 5
Sequence: TTGATGTTGATCAA
Locus tag: Sfri_3610
Name: Sama_2599
Funciton: Predicted lipoprotein
Sfri_3610
Sama_2599
Predicted lipoprotein
Position: -109
Score: 4.2
Sequence: TTGATGGCGATCAT
Locus tag: Sfri_3882
Name: oprP
Funciton: Phosphate-specific outer membrane porin
Locus tag: Sfri_3883
Name: phoX
Funciton: Conserved hypothetical protein
Locus tag: Sfri_3884
Name: phoU
Funciton: Phosphate transport regulatory protein
Locus tag: Sfri_3885
Name: pit
Funciton: Predicted inorganic phosphate transporter
Sfri_3882
oprP
Phosphate-specific outer membrane porin
Sfri_3883
phoX
Conserved hypothetical protein
Sfri_3884
phoU
Phosphate transport regulatory protein
Sfri_3885
pit
Predicted inorganic phosphate transporter
Position: -164
Score: 4.4
Sequence: TTGATCAACATCAT
Position: -103
Score: 4.7
Sequence: TTGATTTATATCAA
Locus tag: Sfri_2103
Name: hyaA
Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sfri_2104
Name: hyaB
Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sfri_2105
Name: hyaC
Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sfri_2106
Name: hyaD
Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sfri_2107
Name: hyaE
Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sfri_2108
Name: hyaF
Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Sfri_2103
hyaA
Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Sfri_2104
hyaB
Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Sfri_2105
hyaC
Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Sfri_2106
hyaD
Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Sfri_2107
hyaE
Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Sfri_2108
hyaF
Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -106
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: Sfri_2443
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sfri_2442
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Sfri_2443
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Sfri_2442
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -226
Score: 4.6
Sequence: TTGATATAGGTCAA
Locus tag: Sfri_3500
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
Sfri_3500
SO0579
Predicted serine/threonine protein kinase
Position: -225
Score: 4.6
Sequence: GTGATCTGGCGCAA
Position: -121
Score: 3.9
Sequence: GGGATCTAGTTCAA
Locus tag: Sfri_0052
Name: SO4504
Funciton: Conserved hypothetical protein
Locus tag: Sfri_0053
Name: SO4505
Funciton: Predicted formate dehydrogenase associated protein
Locus tag: Sfri_0054
Name: SO4506
Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: Sfri_0055
Name: SO4507
Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: Sfri_0056
Name: fdhX
Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: Sfri_0057
Name: fdhA1
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Sfri_0058
Name: fdhB1
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sfri_0059
Name: fdhC1
Funciton: Formate dehydrogenase, gamma subunit
Sfri_0052
SO4504
Conserved hypothetical protein
Sfri_0053
SO4505
Predicted formate dehydrogenase associated protein
Sfri_0054
SO4506
Predicted iron-sulfur cluster-binding protein
Sfri_0055
SO4507
Predicted formate dehydrogenase-specific chaperone
Sfri_0056
fdhX
Formate dehydrogenase subunit or accessory protein
Sfri_0057
fdhA1
Formate dehydrogenase, major subunit (EC 1.2.1.2)
Sfri_0058
fdhB1
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Sfri_0059
fdhC1
Formate dehydrogenase, gamma subunit
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